Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N17
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.1  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +1

Query: 97  HWVWRGRAW*RQRCL 141
           HW+W    W R+  L
Sbjct: 175 HWIWTPHGWMRRNVL 189


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 5  EDLVRLTHAPTGRNLHSHR 61
          ED V +T A  GR+L +HR
Sbjct: 29 EDFVDVTLACDGRSLKAHR 47


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 285 WPAIPT*GTRTHCGMSRITSMTI 353
           W A P  G   H G++ I SM +
Sbjct: 46  WRAFPAPGKHFHIGLAIIYSMLL 68


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 285 WPAIPT*GTRTHCGMSRITSMTI 353
           W A P  G   H G++ I SM +
Sbjct: 46  WRAFPAPGKHFHIGLAIIYSMLL 68


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 64  LSMRVQVPSSRCVG 23
           +S++ QVP  RC+G
Sbjct: 139 ISVQEQVPRFRCIG 152


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 326 NVEDNVYDDLPKVSFE 373
           N++  +YD LP+V  E
Sbjct: 568 NIKKEIYDILPEVDVE 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,380
Number of Sequences: 438
Number of extensions: 2256
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)