Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N15
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    27   1.5  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   3.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   4.7  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 293 IYNKMRCNKDLHPSYY 246
           ++NKMR  KD+HP  Y
Sbjct: 583 VFNKMRSLKDIHPELY 598


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 290 YNKMRCNKDLHPSYYIREI 234
           ++K  CNKDL PS  IR +
Sbjct: 43  FSKALCNKDLDPSSTIRSV 61


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 311 YFNKTYIYNKMRCNKDLHPSYYIR 240
           YFN  ++    RC KD+ PS  +R
Sbjct: 25  YFNNEFLMFADRCTKDIIPSEELR 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,785
Number of Sequences: 5004
Number of extensions: 28931
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)