Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N15
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-6|AAC26309.1|  315|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z82055-9|CAL44965.1|  210|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    27   9.8  

>AF077540-6|AAC26309.1|  315|Caenorhabditis elegans Hypothetical
           protein T07H3.2 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  TKIMSKKCESFKRHTSCYSQKTKIVINKKIAIIYVNGKC 170
           T  + KKCE F  HTS    +TK+ + +K  +  +   C
Sbjct: 106 TYTVIKKCEKFLIHTSMAKLETKLALAQKYDLTELQTHC 144


>Z82055-9|CAL44965.1|  210|Caenorhabditis elegans Hypothetical
           protein T26H2.10 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 416 SLTAVLRFLRHLTLISCDRIQKSAG 490
           SLT  LR++R+LTL+  +  Q+S+G
Sbjct: 10  SLTETLRYMRNLTLLHFESQQESSG 34


>Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical
           protein C11E4.8 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 361 MIIS*FTYFMILLVLSYILIKRIFTIKCVAIRTYIL 254
           +II+ FT+  I LVL + LI+ I T +   I  Y++
Sbjct: 71  LIIAGFTFTCIQLVLVFFLIQGIRTFRLAYIEVYMI 106


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 95  MSFETFAFFTHNFSINLSKTL 33
           M    F  FTHN SINLS +L
Sbjct: 71  MKGSMFVVFTHNLSINLSYSL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,089
Number of Sequences: 27780
Number of extensions: 155689
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)