Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N14
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.92 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 YPTLKIFRKGELSSDYNGPRESNGIVKY 339
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 MALSSTCVPKLDPALEIYLLWLTLKHSP 406
           ++++  C  +L+P L IY L + + H P
Sbjct: 110 LSVAVYCRDRLNPNLFIYALSVAILHRP 137


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 361 SSRDLLTLADFEAFTAKDDVVVIGFFEKESD 453
           SSR+    A   + +  D+V VIG+   +SD
Sbjct: 189 SSRNSDRSAGSPSVSESDEVDVIGYTSNQSD 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,860
Number of Sequences: 438
Number of extensions: 2242
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)