Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N13
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 178 2e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 80 9e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 76 1e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 2e-08
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.38
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 1.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 4.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 6.2
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 24 6.2
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 178 bits (433), Expect = 2e-46
Identities = 77/98 (78%), Positives = 91/98 (92%)
Frame = +2
Query: 68 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAM 247
Q+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AM
Sbjct: 329 QIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAM 388
Query: 248 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 361
FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 80.2 bits (189), Expect = 9e-17
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Frame = +2
Query: 80 IQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQ 235
I+ K + FV+W P K +CD PP+ ++ A + N+T+I E + R+ +
Sbjct: 335 IKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHK 394
Query: 236 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 355
F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 76.2 bits (179), Expect = 1e-15
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Frame = +2
Query: 77 NIQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISE 232
+I+++ + FV+W P K +C PP+ + A + N+T+I E + R+
Sbjct: 338 SIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397
Query: 233 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 355
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 398 KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.4 bits (120), Expect = 2e-08
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Frame = +2
Query: 65 RQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQ 235
+ +L I+ + + F+ W P +++ A+ P +++ + N T+I LFKR +Q
Sbjct: 335 KSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQ 394
Query: 236 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 352
+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 395 YDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.38
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 191 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 298
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 1.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 185 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 361
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 4.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 68 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 190
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.2 bits (50), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 169 LQSAGRDVAHGGLHVVRDPFHEVRRVLVLN 80
LQS R + GL +V P HE+ V LN
Sbjct: 1287 LQSWSRILERYGLKLVEAPIHEIAAVGELN 1316
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.2 bits (50), Expect = 6.2
Identities = 8/41 (19%), Positives = 22/41 (53%)
Frame = +2
Query: 116 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQF 238
+P V ++ ++PP ++ ++ G +++F+ E+F
Sbjct: 591 VPRQVFASMLNLPPEVIRRKGSWTGKKDPREDMFRSRFEKF 631
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 23.8 bits (49), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 296 EMEFTEAESNMNDLVSEYQQY 358
E +F+ +ESN ND Y +Y
Sbjct: 560 ECQFSNSESNKNDFEKWYTRY 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,491
Number of Sequences: 5004
Number of extensions: 23337
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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