Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N13
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   4.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   4.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   7.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   7.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 44  GLQEFGTRQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELF 217
           G+  FG    L I   NS +F E+  NN++  V D            I +    QEL+
Sbjct: 318 GVLFFGLLSDLAIGCWNSEHFFEYGGNNIEIIVKDPETLQFPSGMKIISSKKDRQELW 375


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 318 SASVNSISSMPSPVYQCKKALR-LNIAVN 235
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 244 SGELFRDALEQLLDGGRVTDEGR 176
           +G +  + ++ +LD G  T+EGR
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGR 58


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 244 SGELFRDALEQLLDGGRVTDEGR 176
           +G +  + ++ +LD G  T+EGR
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGR 58


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 336 RSFMLLSASVNSISSMPS 283
           R+F LL A  NS++ + S
Sbjct: 116 RNFNLLRADANSVNELES 133


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 108 TKYDEFLF*MLSICLVPNSCSPGIHYLERRHRV 10
           TK   F F   S+ +V   C    H    RHR+
Sbjct: 145 TKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRL 177


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 106 RGMDPEQREDRRVRHPAPRT 165
           R  D E+RE ++ + P+P T
Sbjct: 348 RPSDKEEREAQKSQKPSPVT 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,819
Number of Sequences: 438
Number of extensions: 1672
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)