Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N12
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 35 0.012
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 30 0.44
07_03_0738 + 21093024-21093454,21093540-21093964,21094076-210942... 28 1.8
05_04_0027 - 17298727-17299830 27 2.3
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 27 2.3
08_02_1363 + 26410606-26410680,26411728-26411843,26411927-264119... 27 3.1
08_01_0074 + 530207-532603 27 3.1
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 27 4.1
03_04_0117 + 17411064-17411955,17412111-17413543 27 4.1
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 26 5.4
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 26 7.1
10_08_0200 + 15727759-15727995,15728153-15728566 26 7.1
09_02_0043 - 3444713-3444811,3445077-3445137,3446042-3446090,344... 25 9.4
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 25 9.4
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 25 9.4
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 25 9.4
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 25 9.4
03_05_0369 + 23535251-23535404,23536043-23536860 25 9.4
01_05_0056 + 17693332-17693603,17694298-17694520,17695420-176956... 25 9.4
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 25 9.4
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 36 WDSECDISLLVGTYIHGYENYLAMRIDPQLCFIDKLGP 149
W D L+VG + +GY N+ +R+DP+L K+ P
Sbjct: 1329 WTETDDARLMVGIHWYGYGNWEKIRLDPKLSLTAKIAP 1366
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 15 STPPRLWWDSECDISLLVGTYIHGYENYLAMRIDPQLCFI 134
S P W + E D +L +G HG N+ AM DP+L F+
Sbjct: 1639 SLKPDYWSEDELD-ALWIGVRRHGRGNWEAMLRDPKLKFL 1677
>07_03_0738 +
21093024-21093454,21093540-21093964,21094076-21094201,
21094277-21094398,21094496-21094706,21095038-21095275,
21095351-21095498,21095640-21095975
Length = 678
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 275 EAPGDIATAHAGHFICTVLFSDP 207
E PG+++TAH G F + +DP
Sbjct: 52 ELPGNVSTAHTGGFAVATVGADP 74
>05_04_0027 - 17298727-17299830
Length = 367
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 99 LAMRIDPQLCFIDKLGPPDDAECTDIKSEERKVRGTGVGE 218
+A R+DP L D LG P + D + + R VGE
Sbjct: 33 IAQRLDPSLPIDDMLGTPKKYDTLDGAVRQYRARSGEVGE 72
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 66 VGTYIHGYENYLAMRIDPQLCFI 134
VG I E L M++DPQLC I
Sbjct: 27 VGEKISNMETSLTMKVDPQLCQI 49
>08_02_1363 +
26410606-26410680,26411728-26411843,26411927-26411989,
26412067-26412103,26412193-26412274,26412747-26412865,
26412942-26413037,26413609-26413719,26413792-26413893,
26414053-26414100,26414230-26414445,26414547-26414675
Length = 397
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 152 RWTQFIYEAKLRIDAHCEIIFITVDVCAN 66
+W ++EA L + A+ EI+ VD AN
Sbjct: 333 KWAWVLFEATLDVPANAEIVAKAVDSAAN 361
>08_01_0074 + 530207-532603
Length = 798
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = -2
Query: 284 DRGEAPGDIATAHAGHFICTVLFSDPRSANFSFFAFYICALSIIRWTQFIYEAKLRIDAH 105
D+ + ++A G IC P + F+ ++C ++ + I++ +R+D
Sbjct: 430 DKWDKAEELAVEMIGRGIC------PNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQ 483
Query: 104 CEIIFIT 84
C++I T
Sbjct: 484 CDVITYT 490
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 223 TVQMKCPACAVAMSPGASPRSDEDPS 300
+V+ P CA SP PR ++DP+
Sbjct: 347 SVRSVIPVCAAPPSPRPPPRKEDDPA 372
>03_04_0117 + 17411064-17411955,17412111-17413543
Length = 774
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 78 IHGYENYLAMRIDPQLCFIDKLGPPDDAECTDIKSEERKVRGTGVGEEDCTDEVSSVRGG 257
+ G Y+ ++ F+ L + +K ++VR EDC DE GG
Sbjct: 34 VRGELQYIKDELESMNAFLQNLAATS-SHSVQVKIWMKQVREMAYDAEDCIDEFQHHFGG 92
Query: 258 Y 260
Y
Sbjct: 93 Y 93
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 263 DIATAHAGHFICTVLFSDPRSANFSFFAFY 174
D+A H G+ + + F PR N +F +++
Sbjct: 214 DLAITHGGNNVYLMTFGQPRVGNAAFASYF 243
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 105 LRDNFHNRGCMCQLIERYRTHYPTIIWGVC 16
+ DN N C+L+ R YPTI+W C
Sbjct: 286 ITDNGSNYKKACRLL---RQEYPTIVWQPC 312
>10_08_0200 + 15727759-15727995,15728153-15728566
Length = 216
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 259 MSPGASPRSDEDP 297
+SPG+SPR+ EDP
Sbjct: 188 LSPGSSPRAHEDP 200
>09_02_0043 -
3444713-3444811,3445077-3445137,3446042-3446090,
3446703-3447054,3448231-3448359,3449550-3449555
Length = 231
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 9 VDSTPPRLWWDSECDISLLVGTYIHGYENYLAMRIDPQLCFI 134
VD T R++W E I +++ G+ YL+ LCF+
Sbjct: 112 VDITLARVYWAVEATIQVIISDVQSGFNLYLS-----SLCFV 148
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 265 PGASPRSDEDPSRGHLW 315
P + DEDP GH+W
Sbjct: 14 PNPAADDDEDPDGGHIW 30
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 54 ISLLVGTYIHGYENYL--AMRIDPQLCFIDKLGPPDDAECTDIKSEERKVRGTGVGEEDC 227
I +L+G + + +++ A R+ + +DK G P +KS++ V + C
Sbjct: 585 IPILIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPRFLKSKQNAVVQVTLDAPVC 644
Query: 228 TDEVSSVR 251
E S R
Sbjct: 645 VQEFSKCR 652
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 54 ISLLVGTYIHGYENYL--AMRIDPQLCFIDKLGPPDDAECTDIKSEERKVRGTGVGEEDC 227
I +L+G + + +++ A R+ + +DK G P +KS++ V + C
Sbjct: 585 IPILIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPRFLKSKQNAVVQVTLDAPVC 644
Query: 228 TDEVSSVR 251
E S R
Sbjct: 645 VQEFSKCR 652
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 242 QRARWLCPRALRRDPTRIRRGDTC 313
+R RW C R P RRG C
Sbjct: 184 RRWRWRCSETARAPPQERRRGGRC 207
>03_05_0369 + 23535251-23535404,23536043-23536860
Length = 323
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 90 ENYLAMRIDPQL-CFIDKLGPPDDAECTDIKSEERKVRGTGVGEEDCTDEVSSVRGGYVP 266
+ ++ R+ +L C + K PP D D S V + +GE D S + GG+ P
Sbjct: 141 DEWVVCRVFKKLQCHLAKPRPPHDDVDGDGASPPEMVDASSLGELGELDVSSILLGGFAP 200
>01_05_0056 +
17693332-17693603,17694298-17694520,17695420-17695668,
17695771-17695824
Length = 265
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 99 LAMRIDPQLCFID 137
+A R DPQLCF D
Sbjct: 253 IAQRFDPQLCFYD 265
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 87 YENYLAMRIDPQLCFIDKLGPPDDAECTDI 176
Y + A+ +D C I +L DD++C+++
Sbjct: 422 YPSAAAVALDKLRCLIKELARLDDSDCSEV 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,745,579
Number of Sequences: 37544
Number of extensions: 181843
Number of successful extensions: 575
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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