Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N12
(315 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 48 2e-06
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 33 0.057
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 32 0.076
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 27 2.8
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 27 2.8
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 27 2.8
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 3.8
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 3.8
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 26 5.0
Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 25 8.7
U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical pr... 25 8.7
AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a prot... 25 8.7
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 36 WDSECDISLLVGTYIHGYENYLAMRIDPQLCFIDK 140
WDS+CD L+G + HG +N+ A+R+D LCF +K
Sbjct: 1996 WDSDCDKCFLIGCWRHGLDNFDAIRVDENLCFAEK 2030
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 36 WDSECDISLLVGTYIHGYENYLAMRIDPQLCFIDKL 143
W D +LL+G + +GY ++ A+++DP L DK+
Sbjct: 1156 WSRPDDSALLLGVWKYGYGSWEAIKMDPTLGLADKI 1191
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 296 GSSSDRGEAPGDIATAHAGHFICTVLFSDPRSANFSFFAFYICALSIIRWTQFIYE 129
G SSDR A G ++ GH + + FS + + S+F IC S+ W +E
Sbjct: 196 GGSSDRVTAFGH---SYGGHVVSVMAFSTEINTDLSYFQRVICMSSVNVWDSLEFE 248
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 141 LGPPDDAECTDIKSEERKVRGTGVGEEDCTDEVSSVRGGYVPGRF---AAIRRGSVA 302
L PD ++ +R+ +GT GE+ TDE V V GRF +AI+ S+A
Sbjct: 195 LTEPDRRRRQALRRAQREAQGTTGGEDRETDEEDVVVFERVTGRFPGGSAIKDNSIA 251
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RVDSTPPRLWWDSECDISLLVGTYIHGY-ENYLAMRI 113
+ ST LWWD+ D ++L+ Y Y E ++ RI
Sbjct: 42 KTQSTSATLWWDAPPDPTVLIRGYTVEYGEGSISQRI 78
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RVDSTPPRLWWDSECDISLLVGTYIHGY-ENYLAMRI 113
+ ST LWWD+ D ++L+ Y Y E ++ RI
Sbjct: 42 KTQSTSATLWWDAPPDPTVLIRGYTVEYGEGSISQRI 78
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RVDSTPPRLWWDSECDISLLVGTYIHGY-ENYLAMRI 113
+ ST LWWD+ D ++L+ Y Y E ++ RI
Sbjct: 42 KTQSTSATLWWDAPPDPTVLIRGYTVEYGEGSISQRI 78
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RVDSTPPRLWWDSECDISLLVGTYIHGY-ENYLAMRI 113
+ ST LWWD+ D ++L+ Y Y E ++ RI
Sbjct: 42 KTQSTSATLWWDAPPDPTVLIRGYTVEYGEGSISQRI 78
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RVDSTPPRLWWDSECDISLLVGTYIHGY-ENYLAMRI 113
+ ST LWWD+ D ++L+ Y Y E ++ RI
Sbjct: 42 KTQSTSATLWWDAPPDPTVLIRGYTVEYGEGSISQRI 78
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 196 FAERGSEKRTVQMKCPACAVA 258
F ++GSE+ V +KCP+ +A
Sbjct: 317 FVDKGSEQGNVYVKCPSIVIA 337
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 196 FAERGSEKRTVQMKCPACAVA 258
F ++GSE+ V +KCP+ +A
Sbjct: 462 FVDKGSEQGNVYVKCPSIVIA 482
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 191 SFFAFYICALSIIRWTQFIYEAKLRIDAH--CEIIFITV 81
S+F +CAL++I + + I AH C I+F+ +
Sbjct: 1047 SYFVGIVCALTVIMLESLMVQDPSLIPAHTVCSIVFLVL 1085
>Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical
protein M162.2 protein.
Length = 170
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 117 PQLCFIDKLGPPDDAECTDIKSEERKVRG 203
P+L F+ L P +C DI + R+++G
Sbjct: 3 PKLLFLAILIPSSLTDCPDIDGQTREIKG 31
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 84 GYENYLAMRIDPQLCFIDKLGPPDDAEC 167
GY R Q+C +D G P+DA+C
Sbjct: 709 GYVPVFLDRTQVQVCQVDLDGCPEDAKC 736
>U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical
protein F45F2.5 protein.
Length = 556
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 139 NWVHLMMLSAQI*KAKKE-KFAERGSEKRT 225
NW+ + ++ + I AKKE K+ GS+ T
Sbjct: 209 NWLSICLIKSSIKHAKKEIKYTYEGSDNET 238
>AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a protein
protein 63 protein.
Length = 305
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 132 IDKLGPPDDAECTDIKSEERKVR 200
+DKLGP DA C ++ E K++
Sbjct: 53 VDKLGPRFDAICLTLRKETLKLQ 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,740,052
Number of Sequences: 27780
Number of extensions: 147970
Number of successful extensions: 397
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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