Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N12
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   8.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 260 IATAHAGHFICT 225
           I   HAG ++CT
Sbjct: 648 ITARHAGEYVCT 659



 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 147  PPDDAECTDIKSEERKV 197
            PP D  CT + S+  ++
Sbjct: 1084 PPHDTTCTTLTSQTIRI 1100


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 51  DISLLVGTYIHGYENYLAMRIDPQLCFID 137
           DI+L      HGY+ Y +      + F+D
Sbjct: 791 DIALYPSQTTHGYDIYASSIDKENILFLD 819


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 231 DEVSSVRGGYVPGRFAAIRRGSVA 302
           + ++  R GY   RFA    G+ A
Sbjct: 395 ENIAHTRSGYSVARFAETALGAAA 418


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 258 YVPGRFAAIRRGSV 299
           Y+P RF    RGS+
Sbjct: 29  YIPTRFRRQERGSI 42


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 244 ACAVAMSPGASPRSD 288
           +C VA  PGAS  S+
Sbjct: 6   SCLVAPFPGASANSE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,790
Number of Sequences: 438
Number of extensions: 1656
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)