Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N11
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    27   2.7  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   4.7  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   6.2  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   6.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.2  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.2  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.2  

>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = +1

Query: 340 GLQVDECWATPAQRLKVQRYKPG------GTVVEAEYLL-NVYERNVQVSDVPAWALGTL 498
           G  VD  W T + + K+  +K         TV   +Y+   ++ +     D   W+LG +
Sbjct: 262 GQMVDAIWLTMSSKDKMATWKKNRRVMAYSTVGTPDYIAPEIFLQQGYGQDCDWWSLGAI 321

Query: 499 LRIARASLPEGCTLNVHE 552
           +       P  C+ N HE
Sbjct: 322 MFECLIGWPPFCSENSHE 339


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 43  HKLHFDRIEASENQTVIMLINRIFNFVKLQHCLRPKTLTLPVLQYQPKRLKSDLY 207
           H+L+F          +I+L+N +F F++    L P  L+L V  Y    +   LY
Sbjct: 419 HRLYFPNWTYPVGPYIIILLNGVFLFLQGYKSLYPFRLSLFVSYYMEIPIVLGLY 473


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 425 ASTTVPPGL*RCTLSRCAGVAQHSSTCKPITSAYLCNWL*YA--SNSVKSY 279
           AS+T P      TLS C GV     TCK  T  YL ++   A  +N +++Y
Sbjct: 30  ASSTKPAST-NGTLSFCLGVKHADGTCK-YTDDYLADFEVLAPYTNMIRTY 78


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 190 LKSDLYEPDYLISLEPDEPVYDCLNLQIKG 279
           L  D Y  + +I ++PDE +Y  +N++  G
Sbjct: 361 LFKDAYHNELVIRVQPDEAIYFKMNIKQPG 390


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 445  YERNVQVSDVPAWALGTLLRI 507
            ++RN  VSD  A A+G LLR+
Sbjct: 1323 FDRNAAVSDAFASAIGYLLRV 1343


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 347 KLMNVGRHQRSDLRYSATSQAVLSSK 424
           K +NV RH++  +RY  T + V + +
Sbjct: 8   KAVNVSRHEQKRIRYKLTPEEVKAER 33


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 572 SSCSMVCSCTFKVHPSGSEARAIRSSVPNAQA 477
           S  S + S +   HPS S    +RS+VP   A
Sbjct: 22  SKSSRLSSTSGSSHPSSSSRLTVRSAVPEKSA 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,300
Number of Sequences: 5004
Number of extensions: 45748
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)