Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N11
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842...    27   8.4  

>03_06_0553 -
           34682581-34683183,34683687-34683842,34684154-34684272,
           34684691-34684793,34685027-34685299,34685411-34685602,
           34686691-34687029
          Length = 594

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = -2

Query: 565 ALWCVRARSKCILLVVKRVQSAVVFLTPKLAHH*PEHY---AHKRSADIRLRRQYRLACS 395
           AL C + +SKC LL ++   S    LT   A   P H+   +  + +++ L   +    +
Sbjct: 184 ALVCDK-KSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLA 242

Query: 394 AVP*VAALVSPNIHQLVN--PSLQHIYVIGSDM 302
           A   +A L  P++H+ V   P  Q I VIG  M
Sbjct: 243 AARWIANLAKPHLHKAVQEFPDYQ-IKVIGHSM 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,202
Number of Sequences: 37544
Number of extensions: 265526
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)