Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N11
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal...    75   2e-13
AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.      75   2e-13
BC036501-1|AAH36501.1|  113|Homo sapiens MRPL48 protein protein.       61   2e-09
BC013051-1|AAH13051.1|  686|Homo sapiens LIM domain kinase 2 pro...    29   9.2  
AC002073-3|AAB54055.1|  733|Homo sapiens Lim kinase protein.           29   9.2  

>BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal
           protein L48 protein.
          Length = 212

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 37/111 (33%), Positives = 63/111 (56%)
 Frame = +1

Query: 250 YDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECWATPAQRLKVQRYKPGGTVVEAE 429
           Y  LN+ +  YD TL E+Y   +H     + ++V+E +A P + ++V + +  G+ +  +
Sbjct: 88  YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 147

Query: 430 YLLNVYERNVQVSDVPAWALGTLLRIARASLPEGCTLNVHEHTIEHEEIRY 582
            +L  +ER VQ+S + A      L I ++SLPEG  L+V EHT E  + R+
Sbjct: 148 SVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRF 198


>AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.
          Length = 212

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 37/111 (33%), Positives = 63/111 (56%)
 Frame = +1

Query: 250 YDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECWATPAQRLKVQRYKPGGTVVEAE 429
           Y  LN+ +  YD TL E+Y   +H     + ++V+E +A P + ++V + +  G+ +  +
Sbjct: 88  YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 147

Query: 430 YLLNVYERNVQVSDVPAWALGTLLRIARASLPEGCTLNVHEHTIEHEEIRY 582
            +L  +ER VQ+S + A      L I ++SLPEG  L+V EHT E  + R+
Sbjct: 148 SVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRF 198


>BC036501-1|AAH36501.1|  113|Homo sapiens MRPL48 protein protein.
          Length = 113

 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 32/98 (32%), Positives = 55/98 (56%)
 Frame = +1

Query: 289 TLLEAYQSQLHKYAEVMGLQVDECWATPAQRLKVQRYKPGGTVVEAEYLLNVYERNVQVS 468
           TL E+Y   +H     + ++V+E +A P + ++V + +  G+ +  + +L  +ER VQ+S
Sbjct: 2   TLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQIS 61

Query: 469 DVPAWALGTLLRIARASLPEGCTLNVHEHTIEHEEIRY 582
              A      L I ++SLPEG  L+V EHT E  + R+
Sbjct: 62  GFSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRF 99


>BC013051-1|AAH13051.1|  686|Homo sapiens LIM domain kinase 2
           protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 169 LQYQPKRLKSDLYEPDYLISLEPDEPVYDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQ 348
           ++Y PK L+  L   +++  LE    +YDC   +I   +  +            E++ ++
Sbjct: 597 IKYDPKELRKHLNLEEWI--LEQLTRLYDCQEEEISELEIDV-----------DELLDME 643

Query: 349 VDECWATPAQRLKVQRYKP 405
            D+ WA+  + L V  YKP
Sbjct: 644 SDDAWASRVKELLVDCYKP 662


>AC002073-3|AAB54055.1|  733|Homo sapiens Lim kinase protein.
          Length = 733

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 169 LQYQPKRLKSDLYEPDYLISLEPDEPVYDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQ 348
           ++Y PK L+  L   +++  LE    +YDC   +I   +  +            E++ ++
Sbjct: 597 IKYDPKELRKHLNLEEWI--LEQLTRLYDCQEEEISELEIDV-----------DELLDME 643

Query: 349 VDECWATPAQRLKVQRYKP 405
            D+ WA+  + L V  YKP
Sbjct: 644 SDDAWASRVKELLVDCYKP 662


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,132,457
Number of Sequences: 237096
Number of extensions: 1572906
Number of successful extensions: 2835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2835
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)