Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N11
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical ...    95   3e-20
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiestera...    27   7.5  
AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical
           protein CD4.3 protein.
          Length = 186

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 54/134 (40%), Positives = 78/134 (58%)
 Frame = +1

Query: 184 KRLKSDLYEPDYLISLEPDEPVYDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECW 363
           +R  S LYEP +  S E   P Y+ +N++I+G+DF  LE YQ+ +HK A+  G  V + +
Sbjct: 28  ERDASLLYEPKFQDSRE--FPEYNTINVRIQGHDFGSLEKYQAYIHKTAKRFGFTVVDSY 85

Query: 364 ATPAQRLKVQRYKPGGTVVEAEYLLNVYERNVQVSDVPAWALGTLLRIARASLPEGCTLN 543
           A  AQ  K   YKP  TV E+E  ++ Y+R V++SDV A       +I RA +P G T+ 
Sbjct: 86  AVAAQTQKAITYKPYSTVSESEIDMSTYDRVVRLSDVAAPRFSLFSQIIRAHIPIGVTMT 145

Query: 544 VHEHTIEHEEIRYV 585
           V EH    E+ RY+
Sbjct: 146 VKEHEKVDEDSRYI 159


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
 Frame = +1

Query: 40  IHKLHFDRIEASENQ-TVIMLINRIFNFVKLQHCLRPKTLTLPVLQYQPKRLKSDLYEPD 216
           + KL  D I   EN+ + +   N      +LQ  L    +    L  +   L+S+L E  
Sbjct: 402 VRKLMLDEIHRLENEMSALQPKNDTTELEELQKTLDDLKIDCCNLTSKMLELQSELVEVK 461

Query: 217 YLISLEPDEPVY------DCLN-LQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECWATPA 375
              + E  E V       + +N L+++      +E   +  H+ AE   +++ E   T  
Sbjct: 462 EKATSEIGEAVQKNGELLEQINSLRVENAKLVDMEGQLNDAHRKAEDKDVRISELLTT-I 520

Query: 376 QRLKVQRYKPGGTVVEAEYLLNVYERNVQVSDVPAWALGTLLRIARASLPEGCTLNVHEH 555
           + L+         ++++E   N Y   ++ +      L T+ R  +AS+ + C+L +   
Sbjct: 521 ESLRQDSEASDKLLMDSESTQNEYSLALENT---VSELETMRREYKASVDKVCSLQLELE 577

Query: 556 TIEHE 570
            I+HE
Sbjct: 578 EIQHE 582


>U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiesterase
           protein 5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 457 VQVSDVPAWALGTLLRIARASLPE 528
           +Q S + AW L  LLR+ RA++PE
Sbjct: 543 MQASRLHAWDLYALLRLNRANIPE 566


>AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical
           protein Y69E1A.7 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 406 GGTVVEAEYLLNVYERNVQVSDVPAWALGTLLRIARASLPEGCTLN 543
           GG  V A+Y+L+  + N  +     W L  +L +   S   G  LN
Sbjct: 136 GGECVNAQYVLSQGKNNEWIGISVGWGLVLMLAVLMGSKISGAHLN 181


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +1

Query: 187 RLKSDLYEPDYLISLEPDEPVYDCLNLQIKGYDFTLLEAYQ 309
           R     Y   Y++++EP+ P++  +   +   D+   E+Y+
Sbjct: 140 RFAPQFYHEPYVVAVEPNLPIWSIIETPVAAIDWDPEESYR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,483
Number of Sequences: 27780
Number of extensions: 252666
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)