Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N11
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.55 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   5.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 170 YNINQKDSRAICTNQII 220
           YN+NQ+DS  I TN  I
Sbjct: 24  YNLNQEDSNWIITNSFI 40


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 471 ITNLNITLINVQQIFGFDDSTAW 403
           I +++ +L+N +  FGF D++ W
Sbjct: 20  IHSISDSLVNAKLAFGFLDNSVW 42


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 392 CTLSRCAGVAQHSST 348
           CT    AG A HS+T
Sbjct: 658 CTAENAAGTASHSTT 672


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 247 VYDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECWA 366
           V+D L  +   +D TLL+  QS +      +G+   +  A
Sbjct: 18  VFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEA 57


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 247 VYDCLNLQIKGYDFTLLEAYQSQLHKYAEVMGLQVDECWA 366
           V+D L  +   +D TLL+  QS +      +G+   +  A
Sbjct: 34  VFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEA 73


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 454 NVQVSDVPAWALGT 495
           NV V+  P WA+GT
Sbjct: 158 NVVVAYEPVWAIGT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,826
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)