Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N10
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 86  LIICGFFNRKKTEIFLF 136
           L IC FF   KT IF++
Sbjct: 90  LAICDFFMMIKTPIFIY 106


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 FLNTII*ITSFGIKFLTFLTYFV 273
           F    I I   GI FLT LT+++
Sbjct: 246 FYTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 FLNTII*ITSFGIKFLTFLTYFV 273
           F    I I   GI FLT LT+++
Sbjct: 246 FYTVNIIIPCMGISFLTVLTFYL 268


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 391 FTIPHVFHERIGHFPDH*LCPRFYPLGIQTICTD 492
           +T+    +  I HF +H   P     G+   C D
Sbjct: 564 YTVDAAIYGNISHFINHSCDPNLAVYGVWINCLD 597


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 291 FFNLSSNKIGQECKKLNSKR 232
           FF  +S  IG+ C++++S R
Sbjct: 44  FFVATSPVIGEPCQRVHSSR 63


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 400 PHVFHERIGHFPDH*LCPR 456
           P  ++ERI  FP   L PR
Sbjct: 590 PFTYNERIFGFPGRLLLPR 608


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 400 PHVFHERIGHFPDH*LCPR 456
           P  ++ERI  FP   L PR
Sbjct: 590 PFTYNERIFGFPGRLLLPR 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,161
Number of Sequences: 438
Number of extensions: 2082
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)