Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N09
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 104 7e-24
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 104 7e-24
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 104 7e-24
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 44 1e-05
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.061
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.3
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 2.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.0
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.2
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 25 9.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 104 bits (250), Expect = 7e-24
Identities = 46/64 (71%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 190 IKAV 201
IKAV
Sbjct: 436 IKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 104 bits (250), Expect = 7e-24
Identities = 46/64 (71%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 190 IKAV 201
IKAV
Sbjct: 436 IKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 104 bits (250), Expect = 7e-24
Identities = 46/64 (71%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 190 IKAV 201
IKAV
Sbjct: 436 IKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG- 186
K+D+ T + ++ P G I L P+C+E F+++ +GRF +RD TVAVG
Sbjct: 598 KLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGK 656
Query: 187 VIKAVN 204
V+K ++
Sbjct: 657 VVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.061
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 103 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 195
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 53 NPLNLVMPPLSTWFPPSPCVWS---PSRNSHPSVVSPCVT*GRRSPSV**RL*TSRKQVV 223
+PL+ + P L WF V+S P+R+S + P + + SP+ +++V+
Sbjct: 707 SPLSELHPQLREWFSSKQSVYSLQYPTRDSIIAFFQPILELIKASPTELPGGIPRKRRVL 766
Query: 224 AKSPKLPKKPP 256
+ P P PP
Sbjct: 767 PELPLAPDPPP 777
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -2
Query: 80 MAASPDLMDLGLSSVDLPVRRST 12
++ +PDL D+ LSSVD P++ +T
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNT 49
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 245 SAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 111
S +VTLPPPAS ++F T T T + S ++ G+ + +++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTS 226
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 260 PLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTA 150
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 281 NSASYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH 108
++ ++ L+A L L + L T+F T T + + R +G ++WK ST+
Sbjct: 178 STIQFYTTLIAIIGELYHLQCLSPL--TSFFTSCVTPKTILESPLRKQGSHNWKTSTN 233
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 348 ATNSFLFYIFYMAYTVTLFLIYIRLYIHLKCFVITAN 458
A + F YI+ + + F + R+ L CF+I AN
Sbjct: 71 AFSIFSHYIYKINFDTFPFFSFKRMRFLLACFLIVAN 107
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 135 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 46
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,207
Number of Sequences: 5004
Number of extensions: 44971
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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