Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N09
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 99 3e-21
03_01_0547 + 4093196-4093657,4094267-4095148 99 3e-21
03_01_0544 + 4082528-4082989,4083585-4084466 99 3e-21
03_01_0543 + 4076981-4077442,4078145-4079026 99 3e-21
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 3e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 45 4e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 45 4e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.005
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 1.3
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 2.3
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 29 2.3
03_01_0554 - 4130608-4130741,4130899-4131952 29 3.1
04_03_0008 + 9296711-9298096 28 5.3
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 28 5.3
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 7.1
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 7.1
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 27 9.3
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 27 9.3
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 27 9.3
07_01_0219 - 1627669-1629765 27 9.3
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 27 9.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 190 IKAV 201
IK V
Sbjct: 426 IKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 190 IKAV 201
IK V
Sbjct: 426 IKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 190 IKAV 201
IK V
Sbjct: 426 IKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 190 IKAV 201
IK V
Sbjct: 426 IKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +1
Query: 13 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 192
++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+AVG++
Sbjct: 588 LEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIV 647
Query: 193 KAV 201
V
Sbjct: 648 SRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 22 RTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 192
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 22 RTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 192
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 31 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 159
K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 373 KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 138 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 52
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 74 PPLSTWFPPSPCVW 115
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 177 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 290
RRRC+K L+ R W++ C G+ V + N++
Sbjct: 102 RRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139
>03_01_0554 - 4130608-4130741,4130899-4131952
Length = 395
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 8 GKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWS 118
G+S ++ +N QR T+ L L P T P PC S
Sbjct: 308 GRSVMMALNLQRKTVEALALYGPERKTCHPYRPCTLS 344
>04_03_0008 + 9296711-9298096
Length = 461
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 7 GKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 99
G++ RR GKST D P +G + PS
Sbjct: 270 GRIPRRGGKSTRDRPYPNPAGTNGVAREAPS 300
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 287 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNI 400
L + SF E+C+ GK L+ L+ + +YCN+
Sbjct: 226 LKYALRATKSF-EKCAGGKPSLNLVMSLHVVAAIYCNL 262
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 74 ASPDLMDLGLSSVDLPVRRSTF 9
A+ DLM G+S V+LPVRR+ F
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHF 601
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 7 GKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 156
G V R + DNP ++ + +A + + LC E F P GRF V
Sbjct: 437 GDVKLRIWRHNIDNPCAVLAPEACCLT-ISHAVLCSEMGTHFSPCGRFLV 485
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 138 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 52
G E+L EG + GGN +DN G+ +N F
Sbjct: 362 GMEYLFEGCSSITEGGNSMDNSGMAEYNLF 391
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 399 MLQYKPCKKYRKGMSL*P-FFPSE 331
M + PCKK +KGM++ P FF S+
Sbjct: 661 MSKLNPCKKQKKGMNILPKFFTSK 684
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = -2
Query: 272 SYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 93
S F L A PPP TP L + A+R GN + + +R +
Sbjct: 123 SIFSALANADRAASAAPPPPP-------TPPGFSRLTAADAERAVSGNLCRCTGYRPILD 175
Query: 92 TRLTMAASPDLMDLGLSS 39
+ AA DL DLGL+S
Sbjct: 176 ACKSFAADVDLEDLGLNS 193
>07_01_0219 - 1627669-1629765
Length = 698
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 221 VAKSPKLPKKPPRARS 268
VAK PKLP++ P+ARS
Sbjct: 298 VAKLPKLPREGPKARS 313
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 480 YSMNLHFSLQL*QNI*GVCITLYKLKIMLQYKPCKKYR 367
+S+N+ +SL L Q I +C+ L L + K +KY+
Sbjct: 206 WSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKYK 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,350,151
Number of Sequences: 37544
Number of extensions: 323257
Number of successful extensions: 1143
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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