Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N09
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 108 3e-24
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 108 3e-24
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 108 3e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 37 0.010
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 31 0.51
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 29 1.6
Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 2.1
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 2.1
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 2.1
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 29 2.1
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 29 2.1
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 2.1
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 2.1
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 2.1
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 28 3.6
AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical ... 28 3.6
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 27 8.3
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 108 bits (259), Expect = 3e-24
Identities = 50/64 (78%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
KVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV
Sbjct: 344 KVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGV 403
Query: 190 IKAV 201
IK+V
Sbjct: 404 IKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 108 bits (259), Expect = 3e-24
Identities = 50/64 (78%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
KVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV
Sbjct: 378 KVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGV 437
Query: 190 IKAV 201
IK+V
Sbjct: 438 IKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 108 bits (259), Expect = 3e-24
Identities = 50/64 (78%), Positives = 56/64 (87%)
Frame = +1
Query: 10 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 189
KVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV
Sbjct: 378 KVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGV 437
Query: 190 IKAV 201
IK+V
Sbjct: 438 IKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 13 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 189
+D++TG+ + K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 190 IKAV 201
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 13 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 192
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585
Query: 193 KAV 201
+ V
Sbjct: 586 EKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 13 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 192
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603
Query: 193 KAV 201
+ V
Sbjct: 604 EKV 606
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 213 SRWWQSHQSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 356
SR+ H S S G EV S +SS+ +T L+S K ++ RRA N
Sbjct: 3717 SRFLNMHNSGSDSDSGSEVRSDSSSSLGGSTESLNSSKKGKRARRAMN 3764
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 20 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 139
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANSTFP 188
>Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical
protein C25F9.1 protein.
Length = 431
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 20 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 139
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFP 188
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 493 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 551
Query: 369 Y 371
Y
Sbjct: 552 Y 552
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 707 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 765
Query: 369 Y 371
Y
Sbjct: 766 Y 766
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 843 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 901
Query: 369 Y 371
Y
Sbjct: 902 Y 902
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 892 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950
Query: 369 Y 371
Y
Sbjct: 951 Y 951
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 892 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950
Query: 369 Y 371
Y
Sbjct: 951 Y 951
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 884 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 942
Query: 369 Y 371
Y
Sbjct: 943 Y 943
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 895 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 953
Query: 369 Y 371
Y
Sbjct: 954 Y 954
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 195 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 368
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 896 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 954
Query: 369 Y 371
Y
Sbjct: 955 Y 955
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 169 ASCHARRNDRGVGIPGRTPHTGAW 98
+SC +NDRG P R+ +GAW
Sbjct: 15 SSCGYCKNDRGERTPARSAKSGAW 38
>AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical
protein Y52E8A.4 protein.
Length = 433
Score = 28.3 bits (60), Expect = 3.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 389 YCNIIFNLYKVIHTPQMFCY 448
+C N +K++ TP+MFC+
Sbjct: 211 FCETFVNSFKLLKTPRMFCF 230
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 335 EGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQM 439
+GK IP +LHG+ N I L+ IHTP +
Sbjct: 131 KGKHCPPSIPKKAWLHGICKNNIKKLFSSIHTPML 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,080
Number of Sequences: 27780
Number of extensions: 267338
Number of successful extensions: 829
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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