Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N08
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   206   2e-54
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   205   3e-54
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   1.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   1.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.1  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   2.8  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   2.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   4.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.4  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   8.4  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  206 bits (502), Expect = 2e-54
 Identities = 90/145 (62%), Positives = 118/145 (81%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M + E   FE G++GAS TFPMQCSALRKNG V++K RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG ++   FD G++L+ TV+ + G
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMG 144


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  205 bits (501), Expect = 3e-54
 Identities = 90/145 (62%), Positives = 118/145 (81%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M + E   FE G++GAS TFPMQCSALRKNG V++K RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG ++   F+ GK+L+ TV+ + G
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMG 144


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126 PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 278
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +1

Query: 22  HITP---YRN*NSVHTTQWVTLKIHISRPETPVPRQHFPCSAPPCVRTVS*C*RVAPARL 192
           H+ P   + N N + + ++    I  S P T       P SAPP     S     A   +
Sbjct: 307 HLAPAFDFLNENPIWSKRFSISSIKYSAPSTSNASNIAPDSAPPASSQFSVPFNAAAENI 366

Query: 193 SRCPLPKLANTVT---LRFTWS 249
           +  P   LAN+ T   L +TWS
Sbjct: 367 NDTPDSVLANSPTPRHLPYTWS 388


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 303  NMDVPHVKREDYQLTDISDDGYL 371
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 219 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 338
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 210 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 335
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 451 SVRSCTPRSPSGILRSSRRSPLSAMR 374
           S R C+P +PS ++ +++ S +SA R
Sbjct: 330 STRLCSPENPSLLVNTAKTSKMSARR 355


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 201 TSRQSCRGDSSTLRNRSYAGRSTAWEML 118
           T+ ++C+GD +T R     G    WEM+
Sbjct: 320 TNCRNCKGDINTFRPTIMVGVPAVWEMV 347


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 321 VKREDYQLTDISDDGYL 371
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 438 QLRTDFDSGKELLCTVLKSCG 500
           QL+  F    E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 150 YAGRSTAWEMLPRHRSLRSRNVYLQ 76
           +A     WE  P+H  +RS N Y++
Sbjct: 94  FADLRELWEYEPKHDKIRSWNTYVR 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,656
Number of Sequences: 5004
Number of extensions: 44133
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)