Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N08
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 188 2e-48
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 183 6e-47
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 173 9e-44
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 136 5e-43
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 6e-08
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 0.69
11_06_0437 - 23533218-23536382 29 2.8
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 3.7
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 3.7
08_02_0483 + 17656376-17656806,17657246-17657423,17657556-176577... 28 3.7
05_01_0297 - 2314687-2316021 28 3.7
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 3.7
12_02_1233 + 27224219-27225607 28 4.8
12_02_0299 - 17051570-17052474,17053542-17053755 28 4.8
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 28 4.8
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 4.8
02_05_0664 + 30717551-30719491 27 6.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 8.5
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 27 8.5
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 188 bits (459), Expect = 2e-48
Identities = 83/148 (56%), Positives = 116/148 (78%), Gaps = 3/148 (2%)
Frame = +3
Query: 66 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH 242
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 243 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP- 419
VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 420 DGDLGVQLRTDF-DSGKELLCTVLKSCG 500
D L Q++ F + GK+++ TV+ + G
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMG 148
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 183 bits (446), Expect = 6e-47
Identities = 83/151 (54%), Positives = 115/151 (76%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK----IVEMSTSKTGKHGH 230
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 231 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 410
AK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDL 133
Query: 411 KIP-DGDLGVQLRTDFDSGKELLCTVLKSCG 500
++P D L Q++T F GK+L+ TV+ + G
Sbjct: 134 RLPTDDSLLGQIKTGFGEGKDLVVTVMSAMG 164
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 173 bits (420), Expect = 9e-44
Identities = 83/160 (51%), Positives = 112/160 (70%), Gaps = 15/160 (9%)
Frame = +3
Query: 66 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK-------------IVEMS 203
M D E+ HFE+ D+GAS T+P Q +RKNG +++K+RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 204 TSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMA 383
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT 1442
Query: 384 DNGDLREDLKIP-DGDLGVQLRTDFDSGKELLCTVLKSCG 500
++G ++DL++P D L Q++ F GK+L+ TV+ + G
Sbjct: 1443 ESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMG 1482
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 136 bits (329), Expect(2) = 5e-43
Identities = 60/106 (56%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Frame = +3
Query: 186 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 365
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 366 YLTLMADNGDLREDLKIP-DGDLGVQLRTDFDSGKELLCTVLKSCG 500
+++L+ +NG+ ++DL++P D +L Q++ F GK+L+ TV+ + G
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMG 179
Score = 55.6 bits (128), Expect(2) = 5e-43
Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK 188
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +3
Query: 318 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGVQLRTDFDSGKELLCTVLK 491
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 492 SCG 500
+ G
Sbjct: 106 AMG 108
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 309 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 428
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 228 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 365
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 168 LKSRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 287
LK++ V+ TSK G+ GH KV V ++ KK D+
Sbjct: 679 LKNQDLLDVDSGTSKIGQSGHDKVEHVTNELSISKKAADV 718
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 99 GDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 257
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>08_02_0483 +
17656376-17656806,17657246-17657423,17657556-17657717,
17658723-17659280
Length = 442
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 195 RQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRS 94
RQ+CR D T RN + AGR T E L R + S
Sbjct: 393 RQACRVDVETGRNVADAGRGTNEEELARFARMLS 426
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 342 LTDISDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLCTVLKSCG 500
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 279 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED--LKIPDGDLGVQLRTD 452
E+I P+ + MD+ + E Y + I+++ + GD+ + L +P+ +L + +
Sbjct: 571 EEIPPNANGMDIDSDREETYNVEGIAENSEDCRVRGGGDIDTECNLSLPEHELPLHQESK 630
Query: 453 FDS 461
DS
Sbjct: 631 SDS 633
>12_02_1233 + 27224219-27225607
Length = 462
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/52 (21%), Positives = 21/52 (40%)
Frame = -2
Query: 210 WKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCV 55
W+W R R ++T+ S+ WE + ++Y+ C C +
Sbjct: 191 WRWEERSFVREGNATMGTIDEVCSSSGWEPFDTYSVYFRGSLYVHCQNNCVI 242
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 254 NADQVNLSVTVFASFGSGHLDNLAGATLQHYETVLTQ-GGALHGKCCRGTGVSG 96
N V +V +S SGH + A L + ++ + GGA +G C GTG G
Sbjct: 142 NVPAVTTTVGHISSSSSGHDHDQPNACLYNLNSLYYRPGGAKNGGQCGGTGGGG 195
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 417 PDGDLGVQLRTDFDSGKELLCTVLKSCG 500
PDGDL ++R +SGKEL L G
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIG 233
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 106 PVPRQHFPCSAPPCVRTVS*C*RVAPARLSRCPLPK 213
P+P+ PC PPC + C + P C PK
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPK 115
>02_05_0664 + 30717551-30719491
Length = 646
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 222 HGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 323
HG+ L+ D+ G D+ HNM++ H+
Sbjct: 385 HGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHI 418
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 351 ISDDGYLTLMADNGDLREDLKIP 419
+ DDG + M NGD RE LK P
Sbjct: 92 VKDDGVINSMTRNGDRRELLKGP 114
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 390 GDLREDLKIPDGDLGVQLRTDFDSGKELLCTVLKSCG 500
G RE +P + V L DS + ++C +L+ CG
Sbjct: 30 GSSRETRMLPRMPVRVLLAEGDDSTRHIICALLRKCG 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,683
Number of Sequences: 37544
Number of extensions: 336337
Number of successful extensions: 1043
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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