Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N08
         (502 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   262   2e-70
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   260   6e-70
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   257   5e-69
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   257   5e-69
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   257   5e-69
BT024354-1|ABC86416.1|  885|Drosophila melanogaster IP09037p pro...    29   4.7  
BT022132-1|AAY51527.1|  885|Drosophila melanogaster IP08837p pro...    29   4.7  
AY484701-1|AAR85347.1|  881|Drosophila melanogaster dysfusion pr...    29   4.7  
AE014297-3920|AAF56569.3|  881|Drosophila melanogaster CG32474-P...    29   4.7  
AB095028-1|BAE53416.1|  918|Drosophila melanogaster bHLH-PAS pro...    29   4.7  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  262 bits (642), Expect = 2e-70
 Identities = 119/145 (82%), Positives = 133/145 (91%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACG 144


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  260 bits (638), Expect = 6e-70
 Identities = 118/145 (81%), Positives = 133/145 (91%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACG 144


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  257 bits (630), Expect = 5e-69
 Identities = 117/145 (80%), Positives = 132/145 (91%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACG 144


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  257 bits (630), Expect = 5e-69
 Identities = 117/145 (80%), Positives = 132/145 (91%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACG 144


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  257 bits (630), Expect = 5e-69
 Identities = 117/145 (80%), Positives = 132/145 (91%)
 Frame = +3

Query: 66  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 245
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 246 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 425
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 426 DLGVQLRTDFDSGKELLCTVLKSCG 500
           +LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACG 144


>BT024354-1|ABC86416.1|  885|Drosophila melanogaster IP09037p
           protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 52
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>BT022132-1|AAY51527.1|  885|Drosophila melanogaster IP08837p
           protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 52
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AY484701-1|AAR85347.1|  881|Drosophila melanogaster dysfusion
           protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 52
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AE014297-3920|AAF56569.3|  881|Drosophila melanogaster CG32474-PA
           protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 52
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AB095028-1|BAE53416.1|  918|Drosophila melanogaster bHLH-PAS
           protein similar to humanNXF protein.
          Length = 918

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 52
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 148 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,757,673
Number of Sequences: 53049
Number of extensions: 561657
Number of successful extensions: 1995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1994
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)