Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N08
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   186   6e-48
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   177   5e-45
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    31   0.47 
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    31   0.62 
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        31   0.62 
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  186 bits (454), Expect = 6e-48
 Identities = 90/143 (62%), Positives = 110/143 (76%), Gaps = 2/143 (1%)
 Frame = +3

Query: 78  EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 257
           +D HF TGDSGA+ATFP QCSALRKN  VM+K RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 434
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125

Query: 435 VQLRTDFDSGK-ELLCTVLKSCG 500
            Q+R  ++  +  +L  V+ + G
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIG 148


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  177 bits (430), Expect = 5e-45
 Identities = 84/143 (58%), Positives = 110/143 (76%), Gaps = 2/143 (1%)
 Frame = +3

Query: 78  EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 257
           ++  F++ +SGA+ATFP QCSALRKN  VM++ RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 434
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159

Query: 435 VQLRTDFDSGK-ELLCTVLKSCG 500
             +R   +  +  +L  V+ +CG
Sbjct: 160 NTIREALEKDEGSVLVQVVAACG 182


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 209 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 39
           G G++ +    T Q  E ++ +   LH   +   G G S L +MC FN   C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 209 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 39
           G G++ +    T Q  E ++ +   LH   +   G G S L +MC FN   C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 334 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 480
           TT  PI++ T  SP+  TT     T+R  T  +     PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 334 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 480
           TT  PI++ T  SP+  TT     T+R  T  +     PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 493 DFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSA 380
           D +T HS+S    K   + T +SPS I   SRRS  SA
Sbjct: 314 DLTTKHSSSNSPHKLAEASTSKSPSPISECSRRSSSSA 351


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +3

Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 413
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 184 QGRLFNITKPFLRRAEHCMGNVAEAPESPVSKCVSSMSP 68
           Q R+    +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 337 QRRVRFCNEPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 363 GYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLC 479
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 87  HFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKV 239
           H ET DSGA A   +   A   +GF  +   P  ++   +S + + G  +V
Sbjct: 86  HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,352
Number of Sequences: 27780
Number of extensions: 271591
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)