Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N08
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    26   0.19 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    26   0.19 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.8  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.5  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 154 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 59
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 154 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 59
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 210 WKWTSRQSCRGDSSTLR 160
           W W   Q+C G +S  R
Sbjct: 111 WSWAKNQNCSGITSVYR 127


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 304 LWVEGQISSYFLPLNISM 251
           LW   QISS  +P N++M
Sbjct: 46  LWTGKQISSLIIPGNVNM 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 255 DIFNGKKYEDIC 290
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 141 RSTAWEMLPRHRSLRSRNVYLQC 73
           RST+ E L    +++S NV+  C
Sbjct: 35  RSTSLEELANRNAIQSDNVFANC 57


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 68  HCVVCTEFQLR 36
           HC  CT++Q+R
Sbjct: 608 HCFNCTQYQIR 618


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 276 YEDICPSTHNMDV 314
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 255 DIFNGKKYEDICPSTH 302
           +I NGKK  +I   TH
Sbjct: 44  EIINGKKLTEIINETH 59


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/17 (29%), Positives = 9/17 (52%)
 Frame = -2

Query: 210 WKWTSRQSCRGDSSTLR 160
           W W   ++C G +S  +
Sbjct: 108 WTWAKNENCSGITSAYK 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,728
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)