Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N06
(344 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 233 2e-62
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 233 2e-62
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 233 2e-62
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 233 2e-62
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 233 2e-62
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 233 2e-62
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 232 4e-62
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 231 1e-61
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 227 2e-60
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 195 8e-51
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 3e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 3e-48
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 185 7e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 180 3e-46
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 140 2e-34
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 123 3e-29
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 92 8e-20
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 78 1e-15
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 47 3e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 47 3e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 46 1e-05
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 34 0.031
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 30 0.51
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 1.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.1
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 3.6
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 4.8
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical ... 27 4.8
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 8.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 8.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 8.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 8.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 8.3
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 26 8.3
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 26 8.3
AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical ... 26 8.3
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 233 bits (571), Expect = 2e-62
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 232 bits (568), Expect = 4e-62
Identities = 104/106 (98%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 231 bits (564), Expect = 1e-61
Identities = 102/106 (96%), Positives = 106/106 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 227 bits (554), Expect = 2e-60
Identities = 101/104 (97%), Positives = 104/104 (100%)
Frame = +2
Query: 32 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 211
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 212 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR+APEEHPVLL
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLL 105
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 195 bits (475), Expect = 8e-51
Identities = 87/88 (98%), Positives = 88/88 (100%)
Frame = +2
Query: 80 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 259
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 260 NWDDMEKIWHHTFYNELRVAPEEHPVLL 343
NWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLL 92
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 3e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKI 283
SKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 3e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKI 283
SKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 185 bits (451), Expect = 7e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDMEKI 283
SKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 180 bits (437), Expect = 3e-46
Identities = 81/83 (97%), Positives = 83/83 (100%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 205
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 206 SKRGILTLKYPIEHGIVTNWDDM 274
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 140 bits (340), Expect = 2e-34
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +2
Query: 158 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 337
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 338 LL 343
LL
Sbjct: 61 LL 62
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 123 bits (297), Expect = 3e-29
Identities = 52/99 (52%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Frame = +2
Query: 50 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 229
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 230 KYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLL 343
+YP+EHGIV NW DMEKIW + F ++L++ PEEHPVLL
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLL 109
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 92.3 bits (219), Expect = 8e-20
Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Frame = +2
Query: 50 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 223
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 224 TLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLL 343
+ YP+++GIV NWDDM +W HTF E L + P+E +LL
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLL 109
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 78.2 bits (184), Expect = 1e-15
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Frame = +2
Query: 26 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 169
M ++ A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 170 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 343
D ++GDEA S T+KYPI HGIV +WD ME+ W + LR PE+H LL
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLL 119
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 47.2 bits (107), Expect = 3e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +2
Query: 41 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 220
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 221 LTLKYPIEHGIVTNWDDMEKIWHHTF 298
++ PIE G V NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 47.2 bits (107), Expect = 3e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +2
Query: 41 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 220
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 221 LTLKYPIEHGIVTNWDDMEKIWHHTF 298
++ PIE G V NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 45.6 bits (103), Expect = 1e-05
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Frame = +2
Query: 35 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 208
+EV+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 209 KR------GILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 340
KR G + P ++ G++ +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVL 127
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 171 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPL 61
P T TP RGRP I + ++ P P PDPL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 29.9 bits (64), Expect = 0.51
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 133 GATSSPGRHGRHGSEG 180
G + +PGRHGRHG+ G
Sbjct: 109 GPSGTPGRHGRHGAPG 124
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 133 GATSSPGRHGRHGSEGLLRR**G-TEQEGYPHTQIPH----RTRHRHQLGR 270
G PGRHGRHGS R G + G PH H H H GR
Sbjct: 358 GPPHCPGRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGR 408
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 80 KAGFAGDDAPRAVFPSIVGRPRHQG 154
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 233 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 334
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 452 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 233 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 334
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 493 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 134 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 298
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 260 NWDDMEKIWHHTFYNE--LRVAPEEHPV 337
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 134 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 298
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 145 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHQL 264
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 145 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHQL 264
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical
protein Y102A11A.6 protein.
Length = 286
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = -2
Query: 289 MPDLLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA 110
M L+H + GDD + D PLA + L TH ++ + S H+ Y
Sbjct: 142 MRHLIHSIKFGDDVSHKNLKGSFD-PLAKRNTSQENGLNTH-EYILKIVPSVHE--DYSG 197
Query: 109 GSVVSRETGFAHSGPIVYDQRGNFLVAHW 23
+ S + F H I Y G + A W
Sbjct: 198 TILNSYQYTFGHKSYITYHHSGKIIPAVW 226
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -3
Query: 288 CQIFSISSQLVTMPC-SMGYLSVRIPL----LLCASSPT*ESF*PMP 163
CQ+FS QLVTM SMG + +++ + LL + S T + P P
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNP 297
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
C12C8.3b protein.
Length = 1143
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 232 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 56
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 55 DQRGNFLV 32
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
C12C8.3a protein.
Length = 1147
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 232 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 56
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 55 DQRGNFLV 32
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 141 GRPTIEGNTARGASSPAKPALHIP 70
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 141 GRPTIEGNTARGASSPAKPALHIP 70
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -3
Query: 255 TMPCSMGYLSVRIPLLLCASSPT*ESF*PMPTMTPW*RGRPTIEGN-TARGASSPAKPAL 79
T+ S PL++ +SS S T+TP +G PT N S+P P
Sbjct: 451 TLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKS 510
Query: 78 HIPDPLSTTNAAT 40
+ STT A +
Sbjct: 511 TVTASPSTTGATS 523
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 141 GRPTIEGNTARGASSPAKPALHIP 70
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 141 GRPTIEGNTARGASSPAKPALHIP 70
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 232 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 56
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 55 DQRGNFLV 32
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 232 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 56
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 55 DQRGNFLV 32
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical
protein T12B3.1 protein.
Length = 446
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 251 IVTNWDDMEKIWHHTFYNELRVAPE 325
++ NWD EK W TF+ L+ E
Sbjct: 382 VLQNWDQTEKDWSPTFWFLLKCIRE 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,470
Number of Sequences: 27780
Number of extensions: 177077
Number of successful extensions: 661
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -