Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N05
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 243 RVYKSMCPNEWVDKWDNQRAEGTFAGRI 326
           R++     NE VDK  N+RA G    +I
Sbjct: 376 RIFSPHEENESVDKHPNRRARGQLRTKI 403


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 330 IIPKHSCNLLRLFLTIG 380
           I+ +HS  L+ LFL++G
Sbjct: 125 ILLEHSSKLVELFLSLG 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 437 FFFFFLGINTFY 402
           F  FFL IN FY
Sbjct: 431 FPLFFLAINVFY 442


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 259 CVPTSGSTN 285
           C+PTSGS N
Sbjct: 114 CLPTSGSDN 122


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 259 CVPTSGSTN 285
           C+PTSGS N
Sbjct: 114 CLPTSGSDN 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,989
Number of Sequences: 438
Number of extensions: 2782
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)