Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N04
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    35   0.006
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    27   1.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   3.9  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   5.2  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   5.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   9.0  

>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
 Frame = +3

Query: 12  FLGITLDNKLQW-GPHIKTLAGMLSSAAFAVRKIRQLTDIATARLVYFAYF----HSLMS 176
           F+    DNK Q   P +K   G+L  AA  V+ I+++  + T+       F    H+   
Sbjct: 86  FVENVTDNKSQLLDPAVKGTLGILE-AAQGVKSIKRI--VITSSFAAVGNFQIDPHNNKV 142

Query: 177 YGILLWGTAAEVDTIFT----LQKRAVRAIYNMGPRESLKNKFQEYDILTLPSQYIFDNL 344
           Y    W      + + T    +   A + +     RE +K K   YDI T+   Y++   
Sbjct: 143 YTEKDWNPITYEEALTTDNGIVAYCASKKLAEEAAREYVKEKKPSYDICTINPPYVYGPP 202

Query: 345 MHIRKNLDKLDLVN 386
           +H  KN+D L+  N
Sbjct: 203 IHPMKNMDSLNTSN 216


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 273 ESLKNKFQE-YDILTLPSQYIFDNLMHIRKN 362
           E LKN     YD+L LP+ Y+ ++++ I  N
Sbjct: 499 EVLKNPLMNIYDLLELPNLYVVEDVVRIEVN 529


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 402 LNYDDHSLDL---ACLNFYEYALSYRRCIGRAKLRYHILETCSLEI 274
           L YD  ++ L    CL   +Y   +R C+ +    YHIL+ CSL+I
Sbjct: 732 LMYDKFTISLFNVRCLIGPDYETGWR-CLPKG-CDYHILKECSLDI 775


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 279 LKNKFQEYDILTLP-----SQYIFDNLMHIRKNLDKLDLVNDRHNLNT 407
           L  K +    LTLP      +Y+ DN+ H  ++L    L++DR+ +NT
Sbjct: 582 LTEKPESSSTLTLPLELKTGRYV-DNISHFAQSLLYTLLISDRYGINT 628


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 LVYFAYFHSLMSYGILLWGTAAEVDTIFTLQKRAV 245
           L Y  YF+S M+  ++ WG         TL + AV
Sbjct: 498 LYYIGYFYSFMTAFLIYWGLNLVFPAKETLLEEAV 532


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 162 HSLMSYGILLWGTAAEVDTIFTLQKRAVRAIYNMGP 269
           HS + +GI  + T AE+D       R V  + NM P
Sbjct: 444 HSSIRFGIGRFTTEAEIDYAIENVSRQVSFLRNMSP 479


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 192  WGTAAEVDTIFTLQKRAVRAIYNMGPRESLKNKFQE 299
            W  A +VD + +L + A   +++    E LK +F+E
Sbjct: 1030 WTHACDVDQMNSLLREAFVLLHSNNIMERLKQEFEE 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,459
Number of Sequences: 5004
Number of extensions: 31240
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)