Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N04
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226...    28   2.9  
04_03_0491 - 16519274-16519552,16519945-16520195,16520317-165204...    28   3.8  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    27   5.1  
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684...    27   6.7  
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    27   6.7  
11_06_0764 + 27108979-27110018,27110176-27112270                       27   8.8  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   8.8  
02_01_0510 + 3703715-3705040                                           27   8.8  

>08_02_0393 +
           16621137-16621139,16621392-16621583,16622559-16622612,
           16623041-16623160,16623280-16623501,16623594-16623650,
           16623993-16624046,16624395-16624426,16624888-16625023,
           16625108-16625278,16625430-16625661,16626018-16626022
          Length = 425

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 106 FRTAKAAELSIPAKVLICGPHCNLLSSVIPKNSL 5
           F   K  +  +  K+LICG HC L SS++  NSL
Sbjct: 174 FPDIKIYDEDVNLKLLICGAHCTLDSSLL--NSL 205


>04_03_0491 -
           16519274-16519552,16519945-16520195,16520317-16520408,
           16520409-16520605,16521462-16521501,16522915-16522994
          Length = 312

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 225 TLQKRAVRAIYNMGPRESLKNKFQEY 302
           T + R  R++Y +GPR  +K +  EY
Sbjct: 188 TKRMRKTRSVYEIGPRSWIKKEINEY 213


>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 300 ILETCSLEIREVPYYILLEQL--SFVT*KWCLPLLLYPTAKYRKTLSCESK 154
           IL    L +  +PY  LLEQ+  +    +W +P + YP       +SC SK
Sbjct: 817 ILYNEELFVPSIPYRELLEQIIPNSADLEWAVPAVSYPRFVKLLQVSCYSK 867


>02_05_0854 -
           32267047-32267298,32267383-32268194,32268289-32268421,
           32268530-32268619
          Length = 428

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 9   LFLGITLDNKLQWGPHI 59
           LF G T D++L WGPH+
Sbjct: 131 LFEGGTPDSRLDWGPHM 147


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 9   LFLGITLDNKLQWGPHI 59
           LF G T D++L WGPH+
Sbjct: 131 LFEGGTPDSRLDWGPHM 147


>11_06_0764 + 27108979-27110018,27110176-27112270
          Length = 1044

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 324 QYIFDNLMHIRKNLDKLDLVNDRHNLNTRSKD 419
           QYI D L  ++  L  L +V + HN + R KD
Sbjct: 38  QYINDELASMQAFLRDLSVVTEGHNHDNRRKD 69


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 279 EIREVPYYILLEQLSFVT*KWCLPL 205
           EI  +P  + +E L   T +WC+PL
Sbjct: 246 EIILIPISVAIESLRVATERWCVPL 270


>02_01_0510 + 3703715-3705040
          Length = 441

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 81  SSAAFAVRKIRQLTDIATARLVYFAYFHSLMSYGILLWGTAAEVDTIFTLQKRAVRAIYN 260
           SS    + K+ Q+TD+    +VY A   SL+    +  G    +   F  ++  V  IYN
Sbjct: 288 SSKEEIIHKVSQITDLRRPVVVYLAVADSLLEDDSITSGWRVGM-VAFEKKRLGVTDIYN 346

Query: 261 MGP 269
             P
Sbjct: 347 RQP 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,572,967
Number of Sequences: 37544
Number of extensions: 180054
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)