Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N04
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL392172-5|CAO03434.1|  120|Homo sapiens novel transcript protein.     31   2.3  
AK125494-1|BAC86182.1|  120|Homo sapiens protein ( Homo sapiens ...    31   2.3  
AL392172-8|CAO03437.1|  158|Homo sapiens novel transcript protein.     30   4.1  
AL392172-7|CAO03436.1|  100|Homo sapiens novel transcript protein.     30   4.1  
AL392172-6|CAO03435.1|   99|Homo sapiens novel transcript protein.     30   4.1  

>AL392172-5|CAO03434.1|  120|Homo sapiens novel transcript protein.
          Length = 120

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  TLD-NKLQWGPHIKTLAGMLSSAAFAVRKIR 113
           TLD +KL WGP+++  AG ++S +F++  ++
Sbjct: 55  TLDPSKLSWGPYLRFWAGRIASTSFSMLSLQ 85


>AK125494-1|BAC86182.1|  120|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43505 fis, clone PEBLM2007140. ).
          Length = 120

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  TLD-NKLQWGPHIKTLAGMLSSAAFAVRKIR 113
           TLD +KL WGP+++  AG ++S +F++  ++
Sbjct: 55  TLDPSKLSWGPYLRFWAGRIASTSFSMLSLQ 85


>AL392172-8|CAO03437.1|  158|Homo sapiens novel transcript protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 24  TLD-NKLQWGPHIKTLAGMLSSAAFA 98
           TLD +KL WGP+++  AG ++S +F+
Sbjct: 55  TLDPSKLSWGPYLRFWAGRIASTSFS 80


>AL392172-7|CAO03436.1|  100|Homo sapiens novel transcript protein.
          Length = 100

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 24  TLD-NKLQWGPHIKTLAGMLSSAAFA 98
           TLD +KL WGP+++  AG ++S +F+
Sbjct: 55  TLDPSKLSWGPYLRFWAGRIASTSFS 80


>AL392172-6|CAO03435.1|   99|Homo sapiens novel transcript protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 24  TLD-NKLQWGPHIKTLAGMLSSAAFA 98
           TLD +KL WGP+++  AG ++S +F+
Sbjct: 55  TLDPSKLSWGPYLRFWAGRIASTSFS 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,875,025
Number of Sequences: 237096
Number of extensions: 1099603
Number of successful extensions: 1886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)