Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N04
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    32   0.16 
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    27   4.6  
U61954-10|AAK29802.1|  164|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z32680-4|CAA83601.1|  273|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AJ312288-1|CAC41972.1|  278|Caenorhabditis elegans putative tran...    27   8.0  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    27   8.0  

>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 159 FHSLMSYGILLWGTAAEVDTIFTLQKRAVRAIYNMGPRESLKNKFQEYDILTLPSQYIFD 338
           +H L++  +L       V T FT+ +    A+  +     LK  FQ  DI+ L       
Sbjct: 24  YHFLVT-SLLCLVLFVNVITFFTIARNFEEALNKLKGAPKLKIMFQSVDIIRLKFSETMK 82

Query: 339 NLMHIRKNLDKLDLVNDRHNLNTRSK 416
              HI+  ++ +D+ N     + RSK
Sbjct: 83  LYYHIKIGIETIDIYNPNAIQDLRSK 108


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 120 TDIATARLVYFAYFHSLMSYGILLWGTAAEVDTIF 224
           TD  + +L   A  +  +  GILLW   A +D+ F
Sbjct: 222 TDRISKKLTRLALVYCFLYTGILLWSVIASIDSSF 256


>U61954-10|AAK29802.1|  164|Caenorhabditis elegans Hypothetical
           protein F41H10.2 protein.
          Length = 164

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -1

Query: 336 RRCIGRAKLRYHILETCSLEIR----EVPYYILLEQLSFVT*KWCLPLLLYPTAKYRKTL 169
           R+ + +  LR +  +TC  E+      + YY L++       +W L  L Y     R++ 
Sbjct: 55  RQLLRKRLLRKNNKKTCDQELSFVNDNIRYYQLIDFAQRTRCRWDLYSLYYLKTAARRSY 114

Query: 168 SCESKQSRLT*Q*QYPSTGEFSEPQK 91
              SK + LT + + P+  +  +P+K
Sbjct: 115 GYSSKNAELTAKSEDPAV-QLLDPKK 139


>Z32680-4|CAA83601.1|  273|Caenorhabditis elegans Hypothetical
           protein C28A5.4 protein.
          Length = 273

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 RAVRAIYNMGPRESLKNKFQEYDILTLPSQ 326
           R  R IYN    + L+ KFQ+   L LP +
Sbjct: 103 RKPRTIYNSSQLQMLQKKFQKTQYLALPDR 132


>AJ312288-1|CAC41972.1|  278|Caenorhabditis elegans putative
           transcription factor protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 RAVRAIYNMGPRESLKNKFQEYDILTLPSQ 326
           R  R IYN    + L+ KFQ+   L LP +
Sbjct: 108 RKPRTIYNSSQLQMLQKKFQKTQYLALPDR 137


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -1

Query: 435 VGRPTCLY-F*YLN-YDDHSLD---LACLNFYEYALSYRRCIGRAKLRYHILETCSLE 277
           +G P C++ + + N Y D +L      CL ++ +A +    I    LR +ILET  L+
Sbjct: 252 LGIPNCMFIYAFFNGYKDETLAYIAFICLTYHGFASTLALIIFTKPLRNYILETLKLK 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,375,137
Number of Sequences: 27780
Number of extensions: 170654
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)