Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N04
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    25   0.49 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   1.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 276 SLKNKFQEYDILTLPSQYIFDNLMHIRKNLDKLDLVNDR 392
           SL+ KF+E   LT+  +  F + +H+ +   K+   N R
Sbjct: 23  SLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRR 61


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 384 NDRHNLNTRSKDKLAVPRF 440
           NDR +L  RS D +  PR+
Sbjct: 35  NDRQSLEARSADLVPEPRY 53


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 15  LGITLDNKLQWGPHIKTLAGMLSSAAFAVRKIRQLTD 125
           LG+ L N      HIK    +L+SA   + K + +T+
Sbjct: 277 LGLKLINAENETAHIKDSLIVLTSALQEMNKSKSITE 313


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 104 PNRKSSGTKHSC 69
           PN   SG+KH C
Sbjct: 99  PNHPLSGSKHLC 110


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 104 PNRKSSGTKHSC 69
           PN   SG+KH C
Sbjct: 99  PNHPLSGSKHLC 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,200
Number of Sequences: 438
Number of extensions: 2065
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)