Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N03
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 151 2e-37
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 151 2e-37
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 0.85
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 0.85
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 0.85
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 28 2.6
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 28 2.6
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 28 2.6
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 3.4
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 3.4
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 3.4
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 3.4
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 27 6.0
Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical pr... 26 7.9
AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical... 26 7.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 151 bits (366), Expect = 2e-37
Identities = 69/114 (60%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Frame = -1
Query: 383 AIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMP 204
A+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+K V+Y HL+P
Sbjct: 23 AVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLP 82
Query: 203 TRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 48
TRYSVD +F+K + + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 83 TRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 151 bits (366), Expect = 2e-37
Identities = 69/114 (60%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Frame = -1
Query: 383 AIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMP 204
A+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+K V+Y HL+P
Sbjct: 23 AVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLP 82
Query: 203 TRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 48
TRYSVD +F+K + + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 83 TRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 320 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 171
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 320 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 171
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 320 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 171
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 350 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 210
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 350 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 210
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 350 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 210
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 382
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 320 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 171
AG++R V + N+ KR KI + YNHL+PT +D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPT---IDYSAMK 430
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 124 RSFLRLAGSFRSFALNFSKLKST 192
+SFL L G +R F LNF+++ S+
Sbjct: 1259 QSFLGLVGYYRKFILNFAQIASS 1281
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 124 RSFLRLAGSFRSFALNFSKLKST 192
+SFL L G +R F LNF+++ S+
Sbjct: 1162 QSFLGLVGYYRKFILNFAQIASS 1184
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 124 RSFLRLAGSFRSFALNFSKLKST 192
+SFL L G +R F LNF+++ S+
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASS 1195
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 151 KTQLSARSCVSTQGSVSKRDTRAERTNGSSRSLG 50
KT+ S S+ S + +DTR + G SRSLG
Sbjct: 376 KTKAKTASGASSVKSFASQDTRNKSNAGDSRSLG 409
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 350 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 210
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHI 331
>Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical
protein C40H1.7 protein.
Length = 388
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 234 YERLDFRPLVNFIFSHPFMNLARVSVDAGDESMSVWF 344
++ D + NF + PF+N+ RV+ D S+W+
Sbjct: 145 HQYYDLWKIGNFNGTVPFLNIGRVTKKFNDNFESLWY 181
>AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical
protein Y45F10D.13a protein.
Length = 473
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 260 KRSKIKPFVKGVN--YNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLR 123
KRSK +P +KG N YN+ + S + + A+ L + +++K R
Sbjct: 63 KRSKSQPIMKGPNDQYNNQERVKQSNEEELLRLKAEKLAEELRKEKER 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,852,059
Number of Sequences: 27780
Number of extensions: 175971
Number of successful extensions: 561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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