Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N01
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   149   6e-38
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   149   8e-38
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   0.76 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   5.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   7.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  149 bits (362), Expect = 6e-38
 Identities = 69/94 (73%), Positives = 79/94 (84%)
 Frame = +3

Query: 12  ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 191
           ARP VS+YS K   V+  ++ LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQT
Sbjct: 4   ARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62

Query: 192 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 293
           SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMC
Sbjct: 63  SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMC 96


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  149 bits (361), Expect = 8e-38
 Identities = 69/94 (73%), Positives = 79/94 (84%)
 Frame = +3

Query: 12  ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 191
           ARP VS+Y+ K   V+  +L LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQT
Sbjct: 4   ARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62

Query: 192 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 293
           SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMC
Sbjct: 63  SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMC 96


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 121 SLTRSGLMGALNTNGRGSEAPATTSLF 41
           S T SGL GA NTN +   +   T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 124 TSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRAT 8
           +SLT S  + + +TN   S +P ++SL S    +   A+
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLAS 121


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 72   GAKPLRRPHSSPNTPTLKVGLP 7
            G  P+  P ++P  PT   GLP
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLP 1227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,079
Number of Sequences: 5004
Number of extensions: 16824
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)