Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N01
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 132 5e-32
07_01_0578 + 4295386-4296489,4297394-4297507 131 8e-32
10_02_0199 + 6668902-6669293,6669825-6669882 32 0.070
03_05_0366 - 23505755-23506441 31 0.16
11_01_0338 + 2522698-2523213 31 0.21
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 29 0.86
02_04_0457 + 23093020-23093343,23093798-23093806 29 0.86
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 1.1
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 28 1.5
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 2.0
03_02_0769 + 11029923-11030172,11030442-11030569,11030892-110311... 27 2.6
09_02_0384 - 8294914-8297817 27 3.5
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 3.5
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 27 3.5
03_02_0075 - 5449313-5449619,5449702-5449730 27 3.5
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 4.6
11_06_0095 - 20030237-20031711,20031731-20033057 26 4.6
10_06_0151 + 11276554-11276916,11277020-11277403 26 4.6
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 26 6.1
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 26 6.1
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 25 8.0
03_01_0220 + 1745719-1745806,1745893-1746062,1746170-1746359,174... 25 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 132 bits (319), Expect = 5e-32
Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = +3
Query: 12 ARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 188
ARPLVSV + + ++ A + +P V +APIRPD+V H +S N RQPY VS+ AGHQ
Sbjct: 5 ARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQ 64
Query: 189 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 293
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMC
Sbjct: 65 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMC 99
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 131 bits (317), Expect = 8e-32
Identities = 63/95 (66%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 15 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 188
RPLVSV + + ++ +SL L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 189 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 293
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMC
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMC 100
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 32.3 bits (70), Expect = 0.070
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 135 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 287
+++ A ++E G A+SW TGRA A + R R GG R A N
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAAN 66
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 81 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 257
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 258 HRSGQGA 278
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 232 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 62
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 ASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSK--EAGHQT 191
ASL +P F+ PI DL+ D + + + C+ + EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 180 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 284
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 90 KAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 203
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 84 VFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 254
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 255 T 257
T
Sbjct: 215 T 215
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 253 PPPRTRGIRATARPVPQDSA 194
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>03_02_0769 +
11029923-11030172,11030442-11030569,11030892-11031137,
11031302-11031557,11031665-11031888
Length = 367
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 51 VVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVAR 230
VVAG +P FVF + N+ VS+SK P + + GHQ + + GR +
Sbjct: 24 VVAGGGMPATFVFGDSLVDAGNNNYLVSLSKANYPPNGIDFD-GHQPTGR-YTNGRTIVD 81
Query: 231 I 233
I
Sbjct: 82 I 82
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 21 LVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSK 143
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 105 PDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIP 236
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 292 HMLPNAPCPDLWVPPP 245
H++P P P WVPPP
Sbjct: 311 HLVPRGPAPP-WVPPP 325
>03_02_0075 - 5449313-5449619,5449702-5449730
Length = 111
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 99 WAP*IQTGGGAKPLRRPHSSPNTPTLKVGLPS 4
WA G G KP R S + +K G+PS
Sbjct: 4 WASPKTRGVGGKPYRNDSSQKDATRIKAGIPS 35
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 207 PKTRRWFDDRPPC*RSRAGARSS 139
PK R+W + P C SR +RS+
Sbjct: 408 PKKRKWIERSPDCVASRLRSRSN 430
>11_06_0095 - 20030237-20031711,20031731-20033057
Length = 933
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 133 DTWTSLTRSGLMGALNTNGRGSEAPATTSL 44
D W S L GAL +N RGS TT +
Sbjct: 298 DVWAPEAISNLFGALVSNLRGSRVLVTTRI 327
>10_06_0151 + 11276554-11276916,11277020-11277403
Length = 248
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 130 TWTSLTRSGLMGALNTNGRGSEAPATT---SLFSEYTDT 23
TWTS+ G G +NG G+ A + + S +E+TDT
Sbjct: 11 TWTSVPGEGGGGGGRSNGGGTAAESDSRELSFDAEHTDT 49
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 81 TGGGAKPLRRPHSSPNTP 28
T G +PL+RP S+P+ P
Sbjct: 84 TAPGGRPLKRPASAPSAP 101
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 33 YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQ 155
Y E + ++G L L F + PIR L N + + + + RQ
Sbjct: 275 YQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQ 315
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 277 APCPDLWVPPPRTRGIRATARPVPQDSALV 188
+P P +P PRT+ +R A +P DS+ +
Sbjct: 382 SPPPVNPLPVPRTKRLRPNATALPADSSAI 411
>03_01_0220 +
1745719-1745806,1745893-1746062,1746170-1746359,
1748486-1748877,1749218-1749523
Length = 381
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 99 IRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG 251
+RP +++DV + ++ A QPY + + +S G+ + R RGG
Sbjct: 325 VRP-IISDVVIGLNHVASQPYVPERSSVSLSSPARCGSPQYAGTPSRRRGG 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,201,110
Number of Sequences: 37544
Number of extensions: 164058
Number of successful extensions: 645
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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