Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N01
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 129 3e-31
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 0.25
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 0.25
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 1.3
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 2.3
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 2.3
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 25 7.1
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 25 7.1
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL032652-2|CAB63397.2| 322|Caenorhabditis elegans Hypothetical ... 25 9.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 129 bits (312), Expect = 3e-31
Identities = 62/94 (65%), Positives = 73/94 (77%)
Frame = +3
Query: 12 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 191
ARPLV+VY EK E + + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 192 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 293
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 95
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 109 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 14
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 109 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 14
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 130 TWTSLTRSGLMGALNTNGRGSEAPATTSLFSEY 32
TW++ M LN+NG +E P TSL S +
Sbjct: 270 TWSNHPAGVKMFDLNSNGNSAEFPIETSLISAF 302
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 97 GALNTNGRGSEAPATTSLFSEYT 29
G LN NGR S A T F++YT
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYT 31
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 97 GALNTNGRGSEAPATTSLFSEYT 29
G LN NGR S A T F++YT
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYT 31
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 253 PPPRTRG-IRATARPVPQDSALV**PA 176
P P TR RAT RP PQ+ A+ PA
Sbjct: 644 PSPTTRPPTRATIRPTPQNKAVTSRPA 670
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 158
Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 814 YEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 158
Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 819 YEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 158
Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 814 YEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 158
Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 819 YEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 216 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 112
DRY +R+W DD + G S +R HH R
Sbjct: 1134 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1167
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 216 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 112
DRY +R+W DD + G S +R HH R
Sbjct: 1136 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1169
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 154 WRAFFDIDT-WTSLTRSGLMGALNTNGRGSEAPATTSLFS 38
++ FFD + W S+ +G++N G G+ + LFS
Sbjct: 2319 YQGFFDHNLEWVSIENIQFVGSMNPIGDGAAVSISNRLFS 2358
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 216 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 112
DRY +R+W DD + G S +R HH R
Sbjct: 1136 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1169
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 144 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 284
N R V K H+ SW T + R GGG R G+G+ G
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGR-GRGSGG 182
>AL032652-2|CAB63397.2| 322|Caenorhabditis elegans Hypothetical
protein Y63D3A.3 protein.
Length = 322
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 286 LPNAPCPDLWVPP 248
+PN P P LW+PP
Sbjct: 1 MPNYPFPILWLPP 13
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,082,264
Number of Sequences: 27780
Number of extensions: 105824
Number of successful extensions: 343
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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