Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M24
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 77 6e-15
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 74 4e-14
09_01_0024 + 438288-438542,439020-439069,440096-440351 30 0.84
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 30 0.84
11_04_0444 + 17816207-17817436 29 1.5
06_03_0334 - 19660526-19661755 29 1.5
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 29 1.9
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 28 3.4
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 3.4
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 28 3.4
01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690 28 3.4
11_02_0038 - 7631462-7634428,7635975-7636250 27 4.5
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 4.5
07_03_0078 - 13147741-13148913 27 7.8
05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673 27 7.8
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281 27 7.8
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 27 7.8
03_05_0975 + 29333960-29334171,29336442-29336523,29336663-293366... 27 7.8
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532... 27 7.8
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 77.0 bits (181), Expect = 6e-15
Identities = 38/62 (61%), Positives = 47/62 (75%)
Frame = +1
Query: 193 VEKFVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMRKAAAT 372
+ + VG A YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR +T
Sbjct: 47 IREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR-MGST 105
Query: 373 PS 378
PS
Sbjct: 106 PS 107
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 74.1 bits (174), Expect = 4e-14
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +1
Query: 193 VEKFVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 357
+ + G A YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 47 IREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 29.9 bits (64), Expect = 0.84
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 178 RILASVEKFVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 339
R+ A +K A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 110 RMDADYQKRKQMAEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 29.9 bits (64), Expect = 0.84
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +3
Query: 18 KSWLPDLKSQLVCEKATKRQRYPLAKRVLHEQSPLKLGQLG*RAFKPNTLSLSANFG 188
K WL D K +V + Q P KR HE P+K + KP L SA G
Sbjct: 350 KIWLLDSKGLIVSSRKDSLQ--PFKKRYAHEHEPVKDLLDAVKVIKPTALIGSAGVG 404
>11_04_0444 + 17816207-17817436
Length = 409
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 ASPRHTHPREEEA*RAQQRTNTDEEGGRNTK 377
ASP HT E+E ++ +++ EEG R T+
Sbjct: 130 ASPCHTRHNEKEVVEVEEASDSSEEGRRGTR 160
>06_03_0334 - 19660526-19661755
Length = 409
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 ASPRHTHPREEEA*RAQQRTNTDEEGGRNTK 377
ASP HT E+E ++ +++ EEG R T+
Sbjct: 130 ASPCHTRHNEKEVVEVEEASDSSEEGRRGTR 160
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 389 WRGGLGVAAAFLICVSTLLSSSRFLFARMCVPRRRFKNLRARLSFDTLSNSIALFS 222
W+G G +FL+C + +S L P ++F + + FD N L S
Sbjct: 372 WQGYQGDTKSFLVCKKKMATSPEMLSCFCPPPFKQFLEVVTNMKFDEEPNYAKLIS 427
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 202 FVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMRKAAA 369
FV YE +++ DK K ++ R + KR E SN++++++ AA
Sbjct: 79 FVRICSYEDPSLKAKLEQADKECQKKIQARSHIFEALRTKRSERSNIISELKPLAA 134
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 315 LRADVCAE-ATLQELKGALIFRYFEQFHCPLLILCV 211
L+ + CA ATL L+ R+ E F CP L LC+
Sbjct: 1418 LKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCL 1453
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 389 WRGGLGVAAAFLICVSTLLSSSRFLFARMCVPRRRFKNLRARLSFDTLSNSIALFS 222
W+G G +FL+C + +S L P + F + + FD N L S
Sbjct: 364 WQGYQGDNKSFLVCKKKMATSPELLCCFCPAPFKHFLEMVTNMKFDEEPNYPKLIS 419
>01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690
Length = 388
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 117 GFVRVIPFLPADIFVVLWPFRRPIAISNRGAMIS 16
GF V+ + P D F+ L PF + ++NRG+++S
Sbjct: 167 GFPDVMVYFP-DNFMNLTPFAGEVYVTNRGSIVS 199
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 259 DKRALKFLKRRLGTHIRAKRKREELSNV 342
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 346 LVRC*ALHASSSR--GCVCRGDAS 281
L RC LH+ SS GC+C GD++
Sbjct: 527 LKRCVGLHSGSSVVVGCICNGDSN 550
>07_03_0078 - 13147741-13148913
Length = 390
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 135 AGLILMGFVRVIPFLPADIFVVLWPF 58
AGL+ V VIP LP + +V WPF
Sbjct: 71 AGLLYFALV-VIPALPGVLRLVAWPF 95
>05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673
Length = 337
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +1
Query: 175 PRILASVEKFVGHAQ----YEKRAMELLKVSKDKRAL-KFLKRRLGTHIRAKRKREELSN 339
PR+ + V H + + K + +K S R+ + R G R +R ++ S
Sbjct: 174 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSEQDPSM 233
Query: 340 VLTQMRKAAATPSPPRHHSH 399
V+T PSP +H H
Sbjct: 234 VITTYEGQHTHPSPVSYHMH 253
>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
Length = 518
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 84 PLAKRVLHEQSPLKLGQLG*RAFKPNTLSL 173
PLA+ + Q P +L G +FKP+ +SL
Sbjct: 395 PLAEHSIQSQQPPQLQSFGNGSFKPSKVSL 424
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 367 ATPSPPRHHSH 399
ATPSPP HH H
Sbjct: 88 ATPSPPPHHQH 98
>03_05_0975 +
29333960-29334171,29336442-29336523,29336663-29336695,
29336803-29336923,29337398-29337577,29337578-29337670,
29338459-29338566,29338654-29338830,29338937-29338992,
29339071-29339155,29339994-29340535
Length = 562
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 48 LVCEKATKRQRYPLAKRVLHEQSPL 122
L C K+T R R P + + +H SPL
Sbjct: 391 LKCSKSTVRYRSPNSAKAIHSVSPL 415
>01_01_0691 -
5328169-5328228,5328300-5328488,5328611-5328768,
5329677-5329767,5330359-5330438,5330472-5330533,
5330603-5330730,5331290-5331508,5331586-5331715,
5331804-5331870,5331968-5332062,5332150-5332221,
5332307-5332362,5332485-5332554,5332662-5332735,
5332820-5332954,5334135-5334314
Length = 621
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = -3
Query: 389 WRGGLGVAAAFLICVSTLLSSSRFLFARMCVPRRRFKNLRARLSFDTLSN---SIALF 225
W+G G FL+C + +S L P R+F L FD N IALF
Sbjct: 289 WQGFQGENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALF 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,780
Number of Sequences: 37544
Number of extensions: 231901
Number of successful extensions: 786
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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