Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M24
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 81 3e-16
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 31 0.25
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 31 0.25
Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z83316-5|CAD30428.2| 345|Caenorhabditis elegans Hypothetical pr... 31 0.44
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 29 1.3
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 29 1.3
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 29 1.3
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 29 1.3
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 29 1.3
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 3.1
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 3.1
Z29117-1|CAA82376.1| 659|Caenorhabditis elegans Hypothetical pr... 27 4.1
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 27 4.1
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 27 4.1
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 27 7.1
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 27 7.1
Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical p... 26 9.4
Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical pr... 26 9.4
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 26 9.4
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 26 9.4
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 26 9.4
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +1
Query: 193 VEKFVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMRKA 363
V + G A YE+R +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ RKA
Sbjct: 46 VREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 41 IAIGLRKGHKTTKISAGKKGITRTKPIKIRPARLKGIQTKHSKFVRE 181
+A+GL KGH T++ P+K R R KG+ +K +K VRE
Sbjct: 9 LAVGLNKGHAATQL-----------PVKQRQNRHKGVASKKTKIVRE 44
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 26 CGWIITIISYLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 26 CGWIITIISYLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical
protein B0379.4b protein.
Length = 491
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 300 THPREEEA*RAQQRTNTDEEGGRNTKPTTPPLT 398
T PRE E ++ QRTN+ +N +P+TP T
Sbjct: 214 TPPREIEKIQSSQRTNSTNNNHQNGRPSTPTNT 246
>Z83316-5|CAD30428.2| 345|Caenorhabditis elegans Hypothetical
protein B0379.4a protein.
Length = 345
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 300 THPREEEA*RAQQRTNTDEEGGRNTKPTTPPLT 398
T PRE E ++ QRTN+ +N +P+TP T
Sbjct: 68 TPPREIEKIQSSQRTNSTNNNHQNGRPSTPTNT 100
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 42 CGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 79
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 117 CGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 117 CGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 117 CGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 369 CGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 253
CG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 117 CGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 121 NGLCSCNTLFASGYLCRFVA-FSQTNCDFK 35
NG C+ N L GY+C+ + FS +CD K
Sbjct: 1299 NGKCTNNALSPKGYMCQCDSHFSGEHCDEK 1328
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 121 NGLCSCNTLFASGYLCRFVA-FSQTNCDFK 35
NG C+ N L GY+C+ + FS +CD K
Sbjct: 1299 NGKCTNNALSPKGYMCQCDSHFSGEHCDEK 1328
>Z29117-1|CAA82376.1| 659|Caenorhabditis elegans Hypothetical
protein C48B4.1 protein.
Length = 659
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 395 EWWRGGLGVAAAFLICVSTLLSSSR 321
+WW GGLG + ++ V+ L+ ++
Sbjct: 186 KWWPGGLGTSCTHVVLVANLIIDTK 210
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 12 NPKSWLPDLKSQLVCEKATKRQRYPLAKRVLHEQSPLKLGQLG 140
N K + DL+ +L EKA K+ + + ++ PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 12 NPKSWLPDLKSQLVCEKATKRQRYPLAKRVLHEQSPLKLGQLG 140
N K + DL+ +L EKA K+ + + ++ PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 292 LGTHIRAKRKREELSNVLTQMRKAAATPSPPRHHSH 399
L T + + + SNV R +PPRHH H
Sbjct: 1582 LATRMTMSQSSTKSSNVSVSSRHRDNQSAPPRHHHH 1617
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 292 LGTHIRAKRKREELSNVLTQMRKAAATPSPPRHHSH 399
L T + + + SNV R +PPRHH H
Sbjct: 1743 LATRMTMSQSSTKSSNVSVSSRHRDNQSAPPRHHHH 1778
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 259 DKRALKFLKRRLGTHIRAKRKREELSNVLTQMRK 360
+KR + KR+L HI K K E NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 259 DKRALKFLKRRLGTHIRAKRKREELSNVLTQMRK 360
+KR + KR+L HI K K E NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280
>Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.13 protein.
Length = 249
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 151 NAL*PSWPNFNGLCSCNTLFASGYLCRFVAFSQTNC 44
NA + P GLC C T SGY C VA+ + NC
Sbjct: 95 NAAQSTCPRTCGLC-CQT---SGYNCPNVAYPRLNC 126
>Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.10 protein.
Length = 249
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 151 NAL*PSWPNFNGLCSCNTLFASGYLCRFVAFSQTNC 44
NA + P GLC C T SGY C VA+ + NC
Sbjct: 95 NAAQSTCPRTCGLC-CQT---SGYNCPNVAYPRLNC 126
>Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical
protein T28D6.7 protein.
Length = 322
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 9 VNPKSWLPDLKSQLVCEKATKRQRYPLAK 95
V +SWL K +L+C + + YP AK
Sbjct: 168 VMQRSWLETDKDRLICSHSVCHEDYPPAK 196
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 306 PREEEA*RAQQRTNTDEEGGRNTKPTTPPLTLSEQ 410
P+ ++A + Q TNT ++ +N PT P LT S++
Sbjct: 126 PKAKKAPKVQ--TNTQQQVQQNFNPTPPVLTTSQK 158
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 306 PREEEA*RAQQRTNTDEEGGRNTKPTTPPLTLSEQ 410
P+ ++A + Q TNT ++ +N PT P LT S++
Sbjct: 126 PKAKKAPKVQ--TNTQQQVQQNFNPTPPVLTTSQK 158
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 306 PREEEA*RAQQRTNTDEEGGRNTKPTTPPLTLSEQ 410
P+ ++A + Q TNT ++ +N PT P LT S++
Sbjct: 126 PKAKKAPKVQ--TNTQQQVQQNFNPTPPVLTTSQK 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,326
Number of Sequences: 27780
Number of extensions: 190962
Number of successful extensions: 639
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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