Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M22
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   129   2e-31
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    48   1e-06
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   3.3  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   3.3  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.4  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   5.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  129 bits (311), Expect = 2e-31
 Identities = 59/118 (50%), Positives = 83/118 (70%)
 Frame = +1

Query: 115 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 294
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 295 ETNPALEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLSVVIPDHN 468
              P LE+LLP ++G+VGFVFT  DL +VR+T++ N + APARP AIAPL V +P  N
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGN 125


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
 Frame = +1

Query: 85  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 264
           K G E KA      F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  
Sbjct: 17  KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71

Query: 265 MMRKAIKDHLETNPA--LEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAP-ARPGAI 435
           +M KA+    E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130

Query: 436 APLSVVIP 459
           AP + VIP
Sbjct: 131 APFTHVIP 138


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 241 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGHVGFVFTRGDLV 375
           I L+G N ++     DH++ +P ++   P+I      V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 67  PYFTQSKMGREDKATWKSNY 126
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 261 HHDEESHQGPS*NKSSSRKTASSHQGT 341
           HH+ +     S   S+SRK A SH G+
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTGS 457


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 26   GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 118
            GLC   + L+   +  ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 235 HSIVLMGKNTMMRKAIKDHLE 297
           HS++   KNT   KA+  HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,650
Number of Sequences: 5004
Number of extensions: 45435
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)