Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M22
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 126 7e-30
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 126 9e-30
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 126 9e-30
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 30 1.1
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076... 29 1.9
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 29 1.9
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 2.5
02_04_0427 - 22809481-22810335 28 3.3
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 4.4
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 28 4.4
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 5.8
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 7.6
07_03_0662 + 20431448-20432767 27 7.6
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 7.6
04_01_0404 - 5297341-5297970,5298304-5299179 27 7.6
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 7.6
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 7.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 126 bits (305), Expect = 7e-30
Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + G+VG +FT+GDL +VR+ + + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPDHN 468
VV+P N
Sbjct: 124 VVVPPGN 130
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 126 bits (304), Expect = 9e-30
Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + G+VG +FT+GDL +VR+ + + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPDHN 468
VV+P N
Sbjct: 124 VVVPPGN 130
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 126 bits (304), Expect = 9e-30
Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + G+VG +FT+GDL +VR+ + + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPDHN 468
VV+P N
Sbjct: 124 VVVPPGN 130
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 160 PKCFIVGADNVGSQQ-MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIK 336
P +V ++ G+ Q +Q + L G +++ R ++ LE NP L+ + K
Sbjct: 248 PAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRK 307
Query: 337 GHVGFVFTRGDLVDVRDTLLE 399
GH+ V + D + + L+E
Sbjct: 308 GHL-LVLDKFDKLKLNHGLME 327
>12_02_0781 +
23105554-23106855,23107191-23107511,23107581-23107667,
23107907-23108302,23108327-23108500,23108600-23108764,
23108857-23109151,23109319-23109446,23109681-23109986,
23110531-23110591,23110676-23110915,23111251-23111372
Length = 1198
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 20 HRGLCVFVLSLNFSEVPTSLNPR-WVGRTRLPGSPITSLKSSNCWTNTQNVS 172
H G V VL L FS+ SL R W RTR G + SL S+ + Q +S
Sbjct: 98 HEGF-VIVLGLLFSKCLESLAQRQWYFRTRRVGVQVRSLLSAAIYRKQQKLS 148
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 348 ANMSLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 217
A + D Q+FE+W C ++ GF G F HN Q T
Sbjct: 174 AGKARDSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 28.7 bits (61), Expect = 2.5
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +1
Query: 37 ICLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQI 216
+C+V + L + ++ A+ K + + +++ L E ++ + + Q
Sbjct: 1231 MCMVERILEDNLYADKRLQIVQGASCKIAFILPLLRNLVEEGHYVLIFSQTRVMLNLIQD 1290
Query: 217 RISLRGHSIVLMGKNTMM---RKAIKDHLETNPALEKLLPHIKGHVGFVFTRGDLVDVRD 387
+S+ GH + + T + +K +KD E + LL G +G T+ D V V D
Sbjct: 1291 AVSIEGHKFLRIDGTTKISERKKILKDFQEGLDSPILLLTSHVGGLGNTLTKADRVIVVD 1350
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 306 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 220
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 40 CLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPK 165
CL L+FL T + R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 228 AWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGTCWLCLHPW 365
AWS H HH+ H PS + S + +S+ GT L W
Sbjct: 104 AWSPARDHAHAHHNHHHHHHPS-DSSDTASPSSNGAGTGGDVLLQW 148
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 115 KSNYFVKIIQLLDEYPKCF 171
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 157 YPKCFI--VGADNVGSQQMQQIRISL 228
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 220 YGSVASVASLHCPHPL 173
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 172 IVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 324
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 247 LMGKNTMMRKAIKDHLETNPALEKLLPHI 333
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 438 SNGSRTSRGLDFVLQQCITHINKISTGEDKANMSLD 331
+NG+R G + L+Q +T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 216 PYFIAWSQHCAHGQKHHDEESHQG 287
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,324
Number of Sequences: 37544
Number of extensions: 312866
Number of successful extensions: 803
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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