Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M22
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   178   2e-45
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    44   6e-05
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    29   1.3  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z82266-14|CAD36490.1|  467|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z82266-10|CAJ80811.1|  331|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z68213-8|CAA92439.3|  467|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   6.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  178 bits (433), Expect = 2e-45
 Identities = 78/127 (61%), Positives = 103/127 (81%)
 Frame = +1

Query: 88  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 267
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 268 MRKAIKDHLETNPALEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLS 447
           +RKA++ HL  NP+LEKLLPHI  +VGFVFT+ DL ++R  LLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 448 VVIPDHN 468
           V +P  N
Sbjct: 121 VKLPPQN 127


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
 Frame = +1

Query: 82  SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 261
           +K+ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S    GKN
Sbjct: 13  TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71

Query: 262 TMMRKAIKDHLETNPA--LEKLLPHIKGHVGFVFTRGDLVDVRDTLLENKVQAPARPGAI 435
            ++  A+        A  L K    +KG  G +FT     +V     E   +  AR G +
Sbjct: 72  NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131

Query: 436 APLSVVIPD 462
           A  +VV+P+
Sbjct: 132 ATETVVLPE 140


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 166 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 339
           C   G D  + GS +  + R  + GH+ +L  +     + ++DH+++   ++K+   +  
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240

Query: 340 HVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLSV 450
           +  F+  +  L+    T L+   +   RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 166 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 339
           C   G D  + GS +  + R  + GH+ +L  +     + ++DH+++   ++K+   +  
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240

Query: 340 HVGFVFTRGDLVDVRDTLLENKVQAPARPGAIAPLSV 450
           +  F+  +  L+    T L+   +   RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275


>Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404


>Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381


>Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566


>Z82266-14|CAD36490.1|  467|Caenorhabditis elegans Hypothetical
           protein C01F6.6a protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425


>Z82266-10|CAJ80811.1|  331|Caenorhabditis elegans Hypothetical
           protein C01F6.6e protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 254 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 289


>Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404


>Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381


>Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566


>Z68213-8|CAA92439.3|  467|Caenorhabditis elegans Hypothetical
           protein C01F6.6a protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 237 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 338
           +H  H Q HH    HQ PS   N SS    ASS  G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 246 AHGQKHHDEESHQGPS*NKSSSRKTASS 329
           +HG+KHH + +    S + SSS  ++SS
Sbjct: 329 SHGKKHHKKAASSSSSSSSSSSSSSSSS 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,028
Number of Sequences: 27780
Number of extensions: 259034
Number of successful extensions: 705
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)