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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M21
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...   179   2e-46
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...   125   3e-30
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...   121   5e-29
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...   116   1e-27
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...   109   2e-25
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...   103   1e-23
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    93   1e-20
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    85   3e-18
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    46   2e-06
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.11 
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.20 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   2.4  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   3.2  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   3.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   3.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   3.2  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   3.2  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   4.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.6  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    24   7.4  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    24   7.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.4  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    24   9.8  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   9.8  

>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score =  179 bits (435), Expect = 2e-46
 Identities = 85/124 (68%), Positives = 102/124 (82%)
 Frame = +3

Query: 24  QPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDG 203
           Q  +++L+EGTD +QG+ QL+SNINAC  V D +RTTLGP G DKL+VD  G+ VISNDG
Sbjct: 7   QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66

Query: 204 ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIV 383
           ATIMKLLDIVHPAAKTLVDIA++QDAEVGDGTTSVV+ AGELL+  R FVE+GV   +I+
Sbjct: 67  ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLII 126

Query: 384 RAVR 395
           R  R
Sbjct: 127 RGYR 130


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score =  125 bits (301), Expect = 3e-30
 Identities = 59/112 (52%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
 Frame = +3

Query: 60  QTQGKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 233
           Q + KPQ +  SNI A + V DA+RT+LGP+GMDK+I    G+ +++NDGATI+K L ++
Sbjct: 12  QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71

Query: 234 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRA 389
           HPAAK LVD++ +QD E GDGTTSVVILAG +L      +++G+HP VI  +
Sbjct: 72  HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAES 123


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score =  121 bits (291), Expect = 5e-29
 Identities = 51/125 (40%), Positives = 86/125 (68%)
 Frame = +3

Query: 21  MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 200
           MQ  + ++    ++  G    +SNI A + V D +RT LGPR M K+++D  G  +++ND
Sbjct: 1   MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60

Query: 201 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVI 380
           G  I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGE+L    P ++  +HP V+
Sbjct: 61  GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120

Query: 381 VRAVR 395
           +R+ +
Sbjct: 121 IRSFK 125


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score =  116 bits (279), Expect = 1e-27
 Identities = 52/113 (46%), Positives = 76/113 (67%)
 Frame = +3

Query: 57  DQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVH 236
           ++  G+     N+ A   + + V+++LGP G+DK++VD  G   ++NDGATI+ LLD+ H
Sbjct: 15  EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74

Query: 237 PAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 395
           PA K LV++A+ QD EVGDGTTSVVI+A ELL+R    V+  +HP  I+   R
Sbjct: 75  PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYR 127


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score =  109 bits (261), Expect = 2e-25
 Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
 Frame = +3

Query: 9   RNIKMQPQILLL-REGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKA 185
           R+ +  P IL+  +E   +  G   + S+I A + V + VRT+LGPRG+DK+++   G+ 
Sbjct: 11  RDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEI 70

Query: 186 VISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGV 365
            ++NDGATI+  +++ H  AK LV ++KSQD E+GDGTT VV+LAG LL++    +++G+
Sbjct: 71  TVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGI 130

Query: 366 HP 371
           HP
Sbjct: 131 HP 132


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  103 bits (246), Expect = 1e-23
 Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
 Frame = +3

Query: 39  LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAVISNDGATIM 215
           +  E   Q +G+   +S+      V D V++TLGP+GMDK++  +S G  V++NDGATI+
Sbjct: 8   IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67

Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 395
           K + + + AAK LV+I+K QD EVGDGTTSV + A ELL++    V   +HP+VI+   R
Sbjct: 68  KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYR 127


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 93.5 bits (222), Expect = 1e-20
 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
 Frame = +3

Query: 39  LLREGTDQTQG-KPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIM 215
           L REG    QG +  +I N NA + + +  RT+LGP G +K++V+H  +  ++ND ATI+
Sbjct: 13  LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72

Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVR 386
           + L+++HPAAK +VD  + Q+ E+GD    VV+  GELL +    +  G+ P  I +
Sbjct: 73  RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAK 129


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 42/114 (36%), Positives = 65/114 (57%)
 Frame = +3

Query: 39  LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMK 218
           LL    +  Q    L  NI+A   + D +++ LGP G  K++VD +G   ++ DG  ++ 
Sbjct: 4   LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63

Query: 219 LLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVI 380
            + I +P A  +   A +QD   GDGTTSV +L GELLK+   ++ EG+HP +I
Sbjct: 64  EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLI 117


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
 Frame = +3

Query: 120 AVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEV 287
           AV  TLGP+G + LI    G   I+ DG T+ + + +     +  A+ + D+A   +   
Sbjct: 57  AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116

Query: 288 GDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 395
           GDGTT+  +L   +       V  G +P  + R ++
Sbjct: 117 GDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQ 152


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
 Frame = -3

Query: 364 TPSSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAG---CTISNSFMMVAPSF 194
           T SST   ++  S    + +     PTS+S D + S    ++G    +I ++F  V+   
Sbjct: 521 TSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSIL 580

Query: 193 -EITALPL*STISLSMPLGPSVVRTASTTSWQALMLDIS 80
              T+ P  +++S+S     S   +AST+S  ++   IS
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS 619


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 387 LER*L*DGPLLQQTASISSEVHQLRLQPM*YHHR 286
           LE+ L +     Q A +  +V QL+L+P  YHH+
Sbjct: 449 LEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQ 482


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 391 TARTITLGWTPSSTNGLNLFRSSPAKITTDVVPSPTSAS 275
           T  T+T G+T + T+ + +  +     TT V+ +PT+ +
Sbjct: 797 TVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVT 835


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 22/100 (22%), Positives = 38/100 (38%)
 Frame = +3

Query: 54  TDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 233
           T  T     + SN N+  LV D   +   P  +  +         + N  A+ + +L+  
Sbjct: 218 TTSTNTSTVIPSNPNSVFLV-DCTHSQC-PTDLPNIATTQHSLRYLDNASASAITVLERT 275

Query: 234 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFV 353
           HPAA + +    S  +   D     +  +  + K   PFV
Sbjct: 276 HPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFV 315


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 154 SMPLGPSVVRTASTTSWQALM 92
           S+PL PSVV+  ST S Q L+
Sbjct: 211 SIPLAPSVVQVLSTFSAQELL 231


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 340 NLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGC 233
           NLF + PA   ++V+ +  + +  +A  TK+F A C
Sbjct: 109 NLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANC 144


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 196 FEITALPL*STISLSMPLGPSVV 128
           F+I    L S+I+ S+PL PS++
Sbjct: 252 FQIAGFMLLSSIAASLPLSPSII 274


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 27/93 (29%), Positives = 40/93 (43%)
 Frame = -3

Query: 358  SSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITAL 179
            SS+ G+    SS +K+T++ VPS  S        TK   A  TIS+S      S   T  
Sbjct: 3661 SSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSISDTK-SPATVTISSSSGQFTHSTFSTGS 3719

Query: 178  PL*STISLSMPLGPSVVRTASTTSWQALMLDIS 80
             + +T+S +     S   +   T+  A   D S
Sbjct: 3720 TMHNTVSHATSTSSSFTTSHLPTNTLASTFDNS 3752


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 155 VHAPWAKCCADSINNQLAGIDVRYKLRL 72
           VH+P AK   + + N  +GID+   ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 386 SNDNSRMDPFFNKRPQSLQKFTS*DY 309
           S DNS ++PF N+ P S   F   +Y
Sbjct: 176 SIDNSALEPFLNRYPASESLFPVTEY 201


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 328 SSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSM 149
           SSP+  +T    SP+S+S   + S+   ++  + S+S    + S   ++    S+ S S 
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201

Query: 148 PLGPSVVRTASTTS 107
               S V   S+TS
Sbjct: 202 SSSSSSVPITSSTS 215


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 177 GKAVISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVV 311
           G+A++  D      +++I+H  AKTL D+   ++  +    T VV
Sbjct: 97  GQAIVRRDDDG--NIIEIIHGEAKTLDDVL-DKEISIAPAKTEVV 138


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 15  IKMQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTL 137
           I+    IL+L  G+D+   +   +  +++C+ + D+V TTL
Sbjct: 675 IESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTL 715


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 279 RPEIWQCRPKFLQPDALYPTA 217
           RP I QC    L P  LYP +
Sbjct: 508 RPSIAQCSDTLLNPIQLYPNS 528


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 247 KLWSTLPNLRTLRSVM 294
           +LWSTLP LR L +++
Sbjct: 118 RLWSTLPYLRPLVTII 133


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
 Frame = +3

Query: 9   RNIKMQPQILLLREGTDQTQGKPQL-----ISNINACQLVVDAVRTTLGPRGMDKLIVDH 173
           R +   P+ILLL E T     K ++     + N +  +  +         R  D ++V +
Sbjct: 580 RAVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVN 639

Query: 174 SGKAVISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE 284
           +GK V   +  +  +LLD+ + A   LV+  K    E
Sbjct: 640 AGKIV---EQGSHNELLDL-NGAYARLVEAQKLSGGE 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,297
Number of Sequences: 5004
Number of extensions: 31889
Number of successful extensions: 108
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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