Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M19
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    33   0.007
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   0.36 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   0.83 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   1.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   2.5  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    24   3.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   4.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   4.4  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    23   5.9  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    23   5.9  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 14  TMTMLEQIITDSENATAYELCXXXXXXXXXXXXXXPMELVTANIVRRVLRAVRDE 178
           T  ++ Q+I+ +  +T  +L               P E    NI+RR+LR +R+E
Sbjct: 35  TALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKAQPTEFSCGNIIRRILRLIREE 89


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 85  PCSGPEAGARTSYGAGHRQHSAAGAPRGQG*EQSPCQSEWGDRRRELAGPGARH 246
           P   PE+ +R+S  + H++HS  G  RG+        SE G+RR  + G   RH
Sbjct: 123 PSPLPESASRSSSQSSHQRHSRDG--RGE------LGSEHGERRSAMDGLRDRH 168


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 156 TRRTMLAVTSSIGSASASLRPTARSTPHNS*AVAFSESVI--ICSSMVIVA 10
           T  + +A++S + SAS S      STP  S A A S +V+  + SS   VA
Sbjct: 221 TSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVA 271



 Score = 26.2 bits (55), Expect = 0.83
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 267 SVVRRSGVPSTRPCKLSPAVSPL*LAW-ALFSSLTARSTRRTMLAVTSSIGSASASLRPT 91
           SVV  + V +      +PAVS    +  A+ SS+ + +T     +  SS  S+SAS  PT
Sbjct: 230 SVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289

Query: 90  ARS 82
           + S
Sbjct: 290 SSS 292


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = -2

Query: 177 SSLTARSTRRTMLAVTSSIGSASASL------RPTARSTPHNS*AVAFSESVIICSSMVI 16
           SS T  ST    +  TS+  +AS +L       PT  S         F  S+ +C   V+
Sbjct: 750 SSTTTTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVL 809

Query: 15  VALV 4
             +V
Sbjct: 810 CPIV 813


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -2

Query: 219 SPAVSPL*LAWALFSSLTARSTRRTMLAVTSSIGSASASLRPTARSTPHNS*AVAFSESV 40
           SP+ + L ++ +  SS  + ++  +  +++SSI S+S  L   +  TP  S  +  S S+
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTIL---SSPTPSTSSLMISSSSI 642

Query: 39  IICSSMVI 16
           I  SS ++
Sbjct: 643 ISGSSSIL 650


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +1

Query: 76  WSAPCSGPEAG--ARTSYGAGHRQHSAAGAPRG---QG*EQSPCQSEWGDRRRELAGPGA 240
           +S   +G E G  +R  YG G+R + + G  RG    G      Q   G    E  GPGA
Sbjct: 8   YSGNYNGKEDGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQRGQGRNFYESDGPGA 67


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 120 GSASASLRPTARSTPHNS*AVAFS 49
           G+ SAS+ P+  ST H S   AFS
Sbjct: 54  GTHSASVHPSTSSTSHISSPSAFS 77


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 257 GAAACRAPGPASSRLRSPHSD 195
           G    R+P P  +R RSP++D
Sbjct: 111 GRLRSRSPSPHEARSRSPYND 131


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -1

Query: 157 HP--PHYVGGDQLHRKCERQPPAHCTEHS 77
           HP  P +V    LH       P +C EHS
Sbjct: 619 HPVVPGFVSSPNLHLAGGSDTPIYCIEHS 647


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 217 ACGLPTLIGMGSVLIPDRAEHP 152
           AC +   IGMGS++    + HP
Sbjct: 560 ACVISACIGMGSIIFYGASIHP 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,682
Number of Sequences: 5004
Number of extensions: 20405
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)