Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M19
(274 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36282-2|CAA85288.3| 240|Caenorhabditis elegans Hypothetical pr... 27 1.4
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 27 1.4
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 27 1.4
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 26 3.2
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 26 3.2
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 26 3.2
Z83237-4|CAB05788.1| 356|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 4.2
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 25 5.5
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 25 5.5
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe chro... 25 7.3
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 25 7.3
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 25 9.7
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 25 9.7
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 25 9.7
U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon g... 25 9.7
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 25 9.7
AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein. 25 9.7
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z36282-2|CAA85288.3| 240|Caenorhabditis elegans Hypothetical
protein K10G9.2 protein.
Length = 240
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 183 LFSSLTARSTRRTMLAVTSSIGSASASLRPTARSTPH 73
++S+L ++ R L + S S SL P+AR TPH
Sbjct: 117 VYSNLHSKRKRSNSLTNYNKGQSLSVSLPPSARHTPH 153
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 112 RTSYGAGHRQHSAAGAPRGQG*EQSPCQSEWGDR 213
++ YGA H Q S +P G E ++EW +R
Sbjct: 419 KSGYGARHHQFSECASPEDGG-EWPKTRTEWAER 451
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 112 RTSYGAGHRQHSAAGAPRGQG*EQSPCQSEWGDR 213
++ YGA H Q S +P G E ++EW +R
Sbjct: 419 KSGYGARHHQFSECASPEDGG-EWPKTRTEWAER 451
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 26.2 bits (55), Expect = 3.2
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 79 SAPCSGPEAGARTSYGAGHRQHSA-AGAPRGQG*EQSPCQSEWGDRRRELAGPGARHAAA 255
+AP P+A A T+ AG +SA A AP G G S + D E A P A A
Sbjct: 132 AAPAPAPDA-APTAPAAGAGGYSAGADAPTGGGSYPSKKRRVARDYAEEGAAPAAPAEPA 190
Query: 256 PYHA 267
P A
Sbjct: 191 PVPA 194
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 171 LTARSTRRTMLAVTSSIGSASASLRPTARSTPHNS*AVAFSESVIICSSMVIVALVP 1
L +S+R + A+ +ASA RPT ST + A ES++ CS + + P
Sbjct: 531 LMQKSSRPFIQALFPENVAASAGKRPTTFSTKIRTQANTLVESLMKCSPHYVRCIKP 587
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 171 LTARSTRRTMLAVTSSIGSASASLRPTARSTPHNS*AVAFSESVIICSSMVIVALVP 1
L +S+R + A+ +ASA RPT ST + A ES++ CS + + P
Sbjct: 468 LMQKSSRPFIQALFPENVAASAGKRPTTFSTKIRTQANTLVESLMKCSPHYVRCIKP 524
>Z83237-4|CAB05788.1| 356|Caenorhabditis elegans Hypothetical
protein R06B9.4 protein.
Length = 356
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 119 PMELVTANIVRRVLRAVRDENRAHANQSGETAG 217
PM+++TA + RR+ R+E +A AN + G
Sbjct: 207 PMKIITAKLTRRI--TYREELKAKANAKKKADG 237
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 243 PSTRPCKLSPAVSPL*LAWALFSSLTARSTRRTMLAVTSSIGSASASLRPTARST 79
PST SP+ SP+ SS + T T TS+ S++ + TA ST
Sbjct: 444 PSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 243 PSTRPCKLSPAVSPL*LAWALFSSLTARSTRRTMLAVTSSIGSASASLRPTARST 79
PST SP+ SP+ SS + T T TS+ S++ + TA ST
Sbjct: 444 PSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 69 SYVECSVQWAGGWRSHFLWSWSPPT*CGGCS 161
S+ ECSVQ G RS +P T G CS
Sbjct: 504 SWGECSVQCGHGMRSRNRTFLNPATKSGDCS 534
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 253 QRRAEHQALQALACGLPTLIGMGSVLIPDRAEHPPHYVGG 134
Q+ QAL A G PT GM P + PP Y G
Sbjct: 182 QQYPTQQALPAHLHGTPTYPGMPPQNAPLQHYQPPQYANG 221
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 253 QRRAEHQALQALACGLPTLIGMGSVLIPDRAEHPPHYVGG 134
Q+ QAL A G PT GM P + PP Y G
Sbjct: 182 QQYPTQQALPAHLHGTPTYPGMPPQNAPLQHYQPPQYANG 221
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 79 SAPCSGPEAGARTSYGAGHRQHSAAGAPRGQG 174
+AP PE A+T GAG +AA AP G G
Sbjct: 622 AAPPPAPEP-AQTYSGAGGESAAAAPAPSGGG 652
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 79 SAPCSGPEAGARTSYGAGHRQHSAAGAPRGQG 174
+AP PE A+T GAG +AA AP G G
Sbjct: 622 AAPPPAPEP-AQTYSGAGGESAAAAPAPSGGG 652
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 79 SAPCSGPEAGARTSYGAGHRQHSAAGAPRG 168
S+ +G E+G R G G + S+ G+ RG
Sbjct: 130 SSMSAGSESGGRGGGGGGQKPSSSRGSARG 159
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 79 SAPCSGPEAGARTSYGAGHRQHSAAGAPRG 168
S+ +G E+G R G G + S+ G+ RG
Sbjct: 634 SSMSAGSESGGRGGGGGGQKPSSSRGSARG 663
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 175 IPDRAEHPPH-YVGGDQLHRKCERQPPAHCTEHS 77
+P+ PH YVGGD L P HS
Sbjct: 396 VPEYTHGNPHIYVGGDMLETSTAANDPIFWMHHS 429
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 199 LIGMGSVLIPDRAEHPPHYVGGDQLHR 119
LIG V+ P R PPHY+ +QL R
Sbjct: 175 LIGADPVISPRRQFPPPHYL--EQLQR 199
>U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe
chromosome segregationprotein) homolog protein 1
protein.
Length = 307
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 173 DENRAHANQSGETAGESLQGLVLGTPLRRTTLG 271
DEN + + + S+Q V GTP ++ ++G
Sbjct: 159 DENEIRFDNNSSQSTSSIQNAVNGTPRKKQSVG 191
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 96 AGGWRSHFLWSWSPPT*CGGCS 161
AGG+ S + S PT CG CS
Sbjct: 906 AGGYWSEWTTGGSCPTTCGSCS 927
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 265 RGTAQRRAEHQALQALACG-LPTLIGMGSVLIPDRAEHPPHYVGGDQ 128
R Q + ++ L+ L G LPTL+GM + + + H HY ++
Sbjct: 319 RSPEQYKPMNKFLKTLLLGWLPTLLGMERPDVLELSVHGAHYASDNK 365
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -2
Query: 273 GPSVVRRSGVPSTRPCKLSPAVSPL*LAWALFSSLTARSTRRTMLAVTSSIGSASASLRP 94
GP+ + P+ ++PAV A A ++ A +T A ++ +A S P
Sbjct: 193 GPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATTTAAACTSYIP 252
Query: 93 TARS 82
R+
Sbjct: 253 DGRT 256
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 272 VRAWYGAAACRAPGPASS-RLRSP 204
+R+W G AC A GP S+ R SP
Sbjct: 335 IRSWPGLFACAAVGPNSNIRPSSP 358
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 270 PSVVRRSGVPSTRPCKLSPAVSP---L*LAWALFSSLTARSTRRTMLAVTSSIGSASAS 103
PSV + P+T P L+ ++P + A S A + T VTS + S+SA+
Sbjct: 419 PSVCPTTVAPTTTPALLTSTIAPTADVTSATNAAGSTGATGSSATGSTVTSDVASSSAT 477
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 270 PSVVRRSGVPSTRPCKLSPAVSP---L*LAWALFSSLTARSTRRTMLAVTSSIGSASAS 103
PSV + P+T P L+ ++P + A S A + T VTS + S+SA+
Sbjct: 422 PSVCPTTVAPTTTPALLTSTIAPTADVTSATNAAGSTGATGSSATGSTVTSDVASSSAT 480
>U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon gene
protein 3 protein.
Length = 434
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 131 VTANIVRRVLRAVRDENRAHANQSGETAGESLQGLV 238
V N + R LRA RD + Q+G T SL+ V
Sbjct: 204 VKLNAIWRTLRATRDAAFSVREQAGHTLKFSLENAV 239
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 265 RGTAQRRAEHQALQALACG-LPTLIGMGSVLIPDRAEHPPHYVGGDQ 128
R Q + ++ L+ L G LPTL+GM + + + H HY ++
Sbjct: 319 RSPEQYKPMNKFLKTLLLGWLPTLLGMERPDVLELSVHGAHYASDNK 365
>AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein.
Length = 434
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 131 VTANIVRRVLRAVRDENRAHANQSGETAGESLQGLV 238
V N + R LRA RD + Q+G T SL+ V
Sbjct: 204 VKLNAIWRTLRATRDAAFSVREQAGHTLKFSLENAV 239
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 272 VRAWYGAAACRAPGPASS-RLRSP 204
+R+W G AC A GP S+ R SP
Sbjct: 335 IRSWPGLFACAAVGPNSNIRPSSP 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,775,134
Number of Sequences: 27780
Number of extensions: 141395
Number of successful extensions: 381
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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