Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M19
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   2.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   2.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   2.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   2.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   4.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 79  SAPCSGPEAGARTSYGAGHRQHSAAGAPRGQG 174
           +AP   PE      + A H +    G PR  G
Sbjct: 105 TAPPIPPEIQRALEWNAAHPEEDDGGQPRPPG 136


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 GCSARSGMRTEPMPIRVGR 209
           GC+A    +  P PIRV +
Sbjct: 442 GCTAELRKKEPPHPIRVAK 460


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 GCSARSGMRTEPMPIRVGR 209
           GC+A    +  P PIRV +
Sbjct: 428 GCTAELRKKEPPHPIRVAK 446


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 GCSARSGMRTEPMPIRVGR 209
           GC+A    +  P PIRV +
Sbjct: 462 GCTAELRKKEPPHPIRVAK 480


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 GCSARSGMRTEPMPIRVGR 209
           GC+A    +  P PIRV +
Sbjct: 411 GCTAELRKKEPPHPIRVAK 429


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 131  VTANIVRRVLRAVRDENRAHANQSGET 211
            +T   V   + ++RDENR H +  G T
Sbjct: 1095 MTDKQVEAYMLSLRDENRYHEDIFGIT 1121


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 239 APGPASSRLRSPHSDWHGLCSHP*PRGAP 153
           APGP  S  +SP +   G  S P P   P
Sbjct: 20  APGPQPSPHQSPQAPQRG--SPPNPSQGP 46


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 273 GPSVVRRSGVPSTRPCKLSPAVSPL 199
           GP VV    +       + P VSP+
Sbjct: 185 GPGVVSNPMIAELETLSVEPKVSPM 209


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 273 GPSVVRRSGVPSTRPCKLSPAVSPL 199
           GP VV    +       + P VSP+
Sbjct: 185 GPGVVSNPMIAELETLSVEPKVSPM 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,869
Number of Sequences: 438
Number of extensions: 1589
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)