Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M17
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.0  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   4.7  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   6.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.2  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 58  CS-LRISLYNN*FYWRELLYTVSFIVNNIYCVIISEY 165
           CS L + L+ N + ++ELL    F+V NI  V  S +
Sbjct: 414 CSILSLILFRNLYNYKELLAFAPFVVQNIIIVFSSSF 450


>SPCC1183.04c |pet127||mitochondrial membrane protein
          Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 88 NCCKVKSLKNTLRTRAAVYYKIN 20
          N C +K+  N L ++A+ + K+N
Sbjct: 28 NSCNIKAADNVLHSKASAFEKVN 50


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +1

Query: 10  DFRDLFYNKQLRAFVMCSLRISLYNN*FYWRELLYTVSFIVNNIYCVIISEYQLNFKIL 186
           + RD FY   L       L I L  N + W + L     +  +IY V    Y  N  IL
Sbjct: 187 ELRDDFYTSLLSWSPKGDLAIGLAENIYLWSKELGPTRVLEESIYDVSSVAYSYNGDIL 245


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 456 CTLCSLPSNGELSHAPVF 509
           CT+CS    G +SH+P F
Sbjct: 165 CTVCSCLYQGIISHSPTF 182


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 359 FHSRILWKFYCQLRVKITHGIDFVRSTKLDNS 454
           F S+ + K  CQL   ++H I+ +R  + D S
Sbjct: 531 FRSQEVSKVDCQLAAHVSHSIECIRQKENDPS 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,388
Number of Sequences: 5004
Number of extensions: 39590
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)