Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M17
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       32   0.39 
04_04_0986 - 29931302-29932834                                         29   3.6  
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872...    27   8.4  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -3

Query: 273 GWWRLV*NLRFKKMLEKHHVIKRRLLTGVEYFK----IQLILGDNDTVYIIYNKRHSI 112
           GWW LV NL     + +++V +R LL  +++ K     +L+ G  D V +    R++I
Sbjct: 420 GWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSGTTDRVNLHDKFRNAI 477


>04_04_0986 - 29931302-29932834
          Length = 510

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 231 LEKHHVIKRRLLTGVEYFKIQLILG 157
           L KHH   RRL+TG E+ ++ L+LG
Sbjct: 72  LSKHH---RRLVTGAEFRRLHLLLG 93


>02_02_0299 -
           8726024-8726101,8726460-8726534,8726836-8726965,
           8727406-8727601,8727894-8727965,8728087-8728159,
           8728240-8728344,8728502-8728624,8728730-8728806,
           8729064-8729108,8729214-8729433
          Length = 397

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 429 CVPQNLITHCTLCSLPS 479
           C  Q +ITH  LCS+PS
Sbjct: 136 CAYQEMITHLPLCSIPS 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,350
Number of Sequences: 37544
Number of extensions: 209801
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)