Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M16
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 206 1e-54
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 206 2e-54
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 0.98
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.0
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 5.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 6.9
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 6.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.1
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 206 bits (504), Expect = 1e-54
Identities = 101/157 (64%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 493
A GK V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 206 bits (503), Expect = 2e-54
Identities = 101/157 (64%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 493
A GK V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 0.98
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 138 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 22
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 238 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 375
+R+ R + R+ PT + P + + V LPQ+ ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 80 IFGRTSPWYHDDNPWSLSY 24
I G+ S WYHDD W++ Y
Sbjct: 200 IGGKKSSWYHDD-IWNMKY 217
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 376 LQQPFVLLDALEEVLPALGVLHVL 305
L+ PF+LL + E+LP + VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 275 ILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 397
IL K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 169 TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 348
TK +SIP + Q R S ++ + +Q + HQ P ++++Q P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825
Query: 349 RQGERKAV 372
++ K V
Sbjct: 826 KEVSEKPV 833
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 377 EAKAAGKVVNLKRQPAPPKAAH 442
+ KA K+ + +QP+PP A H
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEH 365
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = -2
Query: 246 TPRACAVTL*TRPVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLRAN 67
TP C + R + W+ FC + S + + +Y S ++ ++ +
Sbjct: 210 TPEFCQIC--EREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKD 267
Query: 66 KSLVP 52
SLVP
Sbjct: 268 SSLVP 272
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 344 KRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKP 466
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.1
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +2
Query: 125 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 277
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 278 LPKRINIR----IEHVKHSKCR-QDFLKRVKEN 361
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,492
Number of Sequences: 5004
Number of extensions: 44889
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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