Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M14
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   177   8e-46
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    28   0.98 
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    27   1.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   3.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.2  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   6.9  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.9  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   9.1  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   9.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  177 bits (431), Expect = 8e-46
 Identities = 88/171 (51%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18  KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 191
           KI+K  + +P   +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 192 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 371
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 372 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQSV 524
           ++AILED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F SV
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSV 174


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 464 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGAGPFLFV 330
           H D +  ++  +DA  F+N+  +   + +   G+IYRS CP A  F F+
Sbjct: 36  HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 48  DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 158
           +T+E  I + L++L + S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 267  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 446
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 447  SQLIKVHLD-*NQQTTIEHKV 506
            S ++   LD  + Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 24   LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 131
            +KA A I+PD FE +I Q L +     N  LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 180 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 272
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 354 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTF 515
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 21   ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 158
            I + G +  +TF+  +SQA ++    + L   +RE ++    E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 384 IWRHIQKSVSWSGAFSVCWLHVSCGWAWAGS 292
           +W HI+    W   F++  L   CG  W  S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 300 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 425
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 237 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 416
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 417 GKRIRV 434
           G  IR+
Sbjct: 167 GVDIRL 172


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 24  LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 155
           L   A+E  T E  +    V +   S LKA +++  + K  E++
Sbjct: 92  LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,901
Number of Sequences: 5004
Number of extensions: 45671
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)