Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M14
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 200 4e-52
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 2.7
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 6.2
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 8.2
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 8.2
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 8.2
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 27 8.2
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 27 8.2
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 27 8.2
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 8.2
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 200 bits (489), Expect = 4e-52
Identities = 96/170 (56%), Positives = 128/170 (75%), Gaps = 1/170 (0%)
Frame = +3
Query: 18 KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 197
K+LK+ E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 198 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 374
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 375 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQSV 524
DA L++LV+PAE+VG+RIRVKLDG ++ KVHLD + QT + HK+ F SV
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASV 176
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 345 AFSVCWLHVSCGWAWAGSYGH 283
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 402 GIPDLPIWRHIQKSVSWSGAFSVCWLHVSCGWAW 301
GIP+ + S++W G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 45 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 218
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 219 IQIRLVRELEK 251
I L+K
Sbjct: 99 IGNMTASALDK 109
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +3
Query: 24 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 203
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 204 KAFQKIQIRLVRELEKKFSGKHVVFV 281
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +3
Query: 24 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 203
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 204 KAFQKIQIRLVRELEKKFSGKHVVFV 281
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +3
Query: 24 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 203
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 204 KAFQKIQIRLVRELEKKFSGKHVVFV 281
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 408 RPGIPDLPIWRHIQKSVSWSGAFSVCWLHVSC 313
RP I D P+W ++ ++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 408 RPGIPDLPIWRHIQKSVSWSGAFSVCWLHVSC 313
RP I D P+W ++ ++++ S+C +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 408 RPGIPDLPIWRHIQKSVSWSGAFSVCWLHVSC 313
RP I D P+W ++ ++++ S+C +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 416 WQTHQSEARWLTTHQSASRLKPTDNY 493
W+ H+SE WLT Q + T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 416 WQTHQSEARWLTTHQSASRLKPTDNY 493
W+ H+SE WLT Q + T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 416 WQTHQSEARWLTTHQSASRLKPTDNY 493
W+ H+SE WLT Q + T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 408 RPGIPDLPIWRHIQKSVSWSGAFSVCWLHVSC 313
RP I D P+W ++ ++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,558
Number of Sequences: 27780
Number of extensions: 266211
Number of successful extensions: 691
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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