Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M12
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   3.8  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   6.6  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    24   8.7  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   8.7  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 93   IK*SSLFTICCFV---YYFMIIIFTIS 22
            IK   L  +CCF+   YYF+  +F++S
Sbjct: 1110 IKSLELLPVCCFLRFMYYFLPTVFSLS 1136


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -3

Query: 161 IKEAS*F--NQSNRYTYNHINV-EVELNEVAYLQ---FAVLYTIL 45
           +KE S F    S +   +H N  EVELN++A+LQ   + ++Y  L
Sbjct: 267 VKEYSDFFDQNSQKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFL 311


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 224 LRHSQPSRQEPVSCKTQPVL 165
           ++ SQPS ++PVS   +P+L
Sbjct: 127 MKDSQPSLEKPVSYVDEPIL 146


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 232 INYYGIHNLLDKNQFHAKHNLS 167
           + Y+G++  L ++ F AK NLS
Sbjct: 8   LQYHGVNTSLSRHLFLAKRNLS 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,248
Number of Sequences: 5004
Number of extensions: 25094
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)