Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M12
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 36 0.019
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 35 0.032
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 33 0.075
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 33 0.099
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 32 0.23
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 31 0.30
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 31 0.53
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 29 2.1
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 2.8
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 28 3.7
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 27 6.5
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 35.5 bits (78), Expect = 0.019
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 146 SLPLLYTGQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
+LP + GQVV + VLV+ V VIVY +I ++ +Y++F + LL+ ++
Sbjct: 1329 ALPYAF-GQVVVELPYVLVQSAVYGVIVYAMIGFEWEAKKFFWYLYFMYFTLLYFTFY 1385
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 34.7 bits (76), Expect = 0.032
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 167 GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
GQVV + LV+ V +IVY +I ++ +Y+FF ++ LL+ ++
Sbjct: 1286 GQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFY 1336
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 33.5 bits (73), Expect = 0.075
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 146 SLPLLYTGQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
+LP + GQV LV+ V+ ++IVY +I + +Y+FF + LL+ ++
Sbjct: 1269 ALPYAF-GQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFY 1325
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 33.1 bits (72), Expect = 0.099
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 167 GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
GQV + +LV+ +V V+VY +I + +Y+FF + LL+ +F
Sbjct: 1246 GQVAIELPYILVQTLVYGVLVYSMIGFEWTVAKFIWYLFFMYFTLLYFTFF 1296
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 152 PLLYT-GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
PL Y GQV + +LV+ ++ V+VY +I ++ +Y+FF + L + ++
Sbjct: 1164 PLPYALGQVAIELPYILVQSLIYGVLVYAMIGFEWTAAKFFWYLFFMYFTLSYYTFY 1220
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 167 GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
GQV LV+ ++ +IVY +I ++ +Y+FF + L+ ++
Sbjct: 1273 GQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFY 1323
>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 167 GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
GQV + ++V+ ++ V+VY +I + +Y+FF + LL+ ++
Sbjct: 1271 GQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFY 1321
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 152 PLLYT-GQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
PL Y GQV + + ++ ++ ++VY +I S +Y+FF + L + ++
Sbjct: 1209 PLPYALGQVAIELPYIFLQTIIYGMLVYAMIGYEWSGAKFFWYLFFMYFTLSYYTFY 1265
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 88 FNSTSTLM*LYVYLFDWLN*LA 153
F STSTL+ +YV++ WLN +A
Sbjct: 956 FISTSTLLCVYVFVVSWLNIVA 977
>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 146 SLPLLYTGQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFFAIYKLLFLEYF 319
+LP + QV+ + + ++ VV +IVY LI + E +Y+FF + ++ ++
Sbjct: 1266 ALPYAFA-QVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFY 1322
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 88 FNSTSTLM*LYVYLFDWLN*LASFIYRTGC 177
F S++T + LYV++F W+N LA + GC
Sbjct: 246 FISSTTFLCLYVFVFCWVN-LAMTARQFGC 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,780,989
Number of Sequences: 37544
Number of extensions: 114591
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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